Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1451 ATGGTGCCAGAAATGAAGGCTTTGGGGAAGAGAAGTTTGGAGTGGGATTTGAATGATTGGAATTGGGATGGAGATCTTTTCACTGCTACTCCACTGAATCCAGTGCCATCAGATTGTAGGAGCCAAAAGCTTTTCCCAGTTGATCCTGAAATTCCTGCAAATGGTGATAGTTCTAACAATTTTGCTTCTCATTGGGACGGTATCGAACCCGGGGAAGGAAATAGTGGATCGGAGAAGATGAGAAGAGGTGTTGGTGTTGTTGCTGAAGGGGTGGAGCTGAATAATGAAGGTAGTGGTTTCCTTAATTTGAACCTTGGGGCTCAAGTATACCCAATTATGGAAGGAGAGGAAATCAGTGGAAAGAAGATGAAGATGACTGGGACTACATCGACTTCGAATCGCGCTGTTTGTCAAGTGGAAGATTGTAGGGCTGATCTTAGTAATGCAAAGGATTACCACCGTCGCCACAAAGTTTGTGATGTGCATTCTAAGGCTAGCAGGGCACTGGTGGGGAGTGTTATGCAGCGGTTCTGTCAACAGTGTAGCAGGTTTCATATTCTTCAAGAGTTTGATGAAGGGAAGAGAAGCTGTCGTAGACGTCTGGCAGGCCACAACAAGAGGAGGAGGAAAACACATCCTGATCCTACTGTAGCTCATGGTGGATCTCTAAATGATGAGAAGGGTAGTAGCTATTTGTTGATGAGTCTGCTGAGGATACTGTCCAATATGCATTCAAATAGCTCAGATCATACAAGAAACCAGGATGTTCTCTCTAATCTGCTGCGGAACCTGGCAAGTATGGCAGGTACAATTAACGGAAGAAGTATAGCATCCTTATTGGAGGGAACTCATGATTTGGTAAAAGCCGGGACATCTGCAGCTGCGCAGAATGTTCCAAACATAAATTCAAATGGTCCAATCCATGAGGATCCTCCTAGGGTACAGTGTGAATCAGTGCCTGCTTATGATATGTCACACGAATGTATATCTTTAGGTAACGGTGGAATAGGAAGTTCGAAACCTCCTTCAGGGCCACAGTCCTCAAGTGCAATTTGGTCGAGGGATATTGTTCCACCTCAATGGGTTGCAGCAGAGACGACAATTTGCAAGAACGGCTTAAACAACATTGACCTGAATAGTGTATATGATGACTTACAGGATAATATTGACAACCCTTCGAATTCTTGTCCTCCCGTGCCTTCAGGGATTGGGTGTCTTGATCATCCTGCATGTGTACAACATGACTCTCTCAGGTCAAGTCCACCACAGACAAGCAGAAACTCGGACTCCACCTCTACCCAGTCACCATCTTGTTCTAGTGGAGAAGCTCAGAGTCGTACAGATCGAATTATTTTCAAACTCTTTGGAAAGTATCCTAATGATTTTCCCCTCGTTCTCCGGTCACAGATCCTTAACTGGTTATCCCACAGCCCCACGGAGATAGAGAGCTATATAAGGCCAGGCTGTATCATATTGGCTGTTTATCTCCGTCTCGAAAATTCTGCATGGGAGGAGCTATGCTACGATCTCGGGTCCAGCTTGAGAAAGCTTCTCGCTGCATCAAACGATTCTTTCTGGAGAACAGGATGGGTATATGCAAGAGTGCAGCACTCTGTAGCTTTTCTGTATAATGGTCTGGTAGTGTTAGATGTGCCATTGCACCTTAAAAGTCGACAAAATTGTCAGATTTTGTGCGTTAAACCACTTGCTGTTTCTTCAAGTTCGAATGCTCAATTTACTGTGAAAGGATTCAACCTTTTCCTGTCTGGCACAAGGTTACTCTGTGCACTTGAAGGGAAGTATCTGGTACAGGACAGTTACGATTTTATTGATAGTTCTGACACAGCTGTTGAACATGATGAAATTCAGCAAGTCAGCTTCTCTTGTCACATTCCAAACGTGACCGGGAGAGGGTTTATCGAGGTGGAAGATAATGGTCTTAGCAGCTGTTCCTTTCCTTTTATAGTTGCAGAGCAAGAAATTTGTTCGGAGATCTGTAAGCTGGATAATGTGATTGAGGCAGCAGAGTCTGCCGCCGATGACATCCAGGTAAAAACTAAACTGATGGAAGAAAAGACTCGAGCGTTGTATTTCATAGAAGAAATGGGTTGGCTCCTTCATCGATGTCGAGTGAAGGTTAGGCTAGGTTCCATGACACCTGTCCAAGATCACTTCCATTTTAATCGGTTCAAGTGGCTTGTTGGCTTCTCCATGGACCATGATTGGTGTGCTGTGATTAAAAAACTATTGGAAATTATCTTTGAGGGTGTTGTCGGCACGGGAGAGCATAACTCTGTTGAGCTTGCATTGATAGACTTAGGTCTTCTACACATAGCAGTGAAGAGAAGCTGCAAACCTATGGTGGAACTACTGTTGAGATTTGTGCCAGTTAAAGCATCAGATGGCGGACATAGAAAAGAGACGCAAGTGGACAAGTCCCTTGACAGATTCTTATTTAGACCCGATGCTTTTGGGCCGGCTGGGTTGACTCCCCTTCATGTTGCAGCGAGTATGAATGGATCGGAGAACGTATTGGATGCATTAACTGATGATCCAGGAATGGTGGGAATCGAAGCATGGAAAAGTGCACGGGACAGTACAGGTTTAACACCCTACGACTACGCATCCCTGCGTGGCTACTACTCCTACATTCATCTTGTCCAGCGGAAAACACGAAAGAAACACGAAAACCAACACGTGCTTGATATCCCTAGCACTCTTGTCGATTGTAACATAAAGCAGAAGCAATCAGATGGGCATAGGTCATCTAAAGTTTCAAGTTTGCAAACCGAGAAGATCGAAACCACGACAACGACACATCACTGTGGGCAATGCCAGCGCAAGCTAGCATATGGTGGTGGAACGAGAAAGGTGGCACTGGTTTATAGGCCGGCAATGCTGTCAATGGTGGCCATTGCAGCTGTATGTGTGTGTGTGGCTTTGCTCTTCAAAAGCTCACCAAAAGTTGATTATGTGTTCCAACCATTCAGATGGGAATCATTGAAGTATGGGTCAATGTAA 3021 0.4485 MVPEMKALGKRSLEWDLNDWNWDGDLFTATPLNPVPSDCRSQKLFPVDPEIPANGDSSNNFASHWDGIEPGEGNSGSEKMRRGVGVVAEGVELNNEGSGFLNLNLGAQVYPIMEGEEISGKKMKMTGTTSTSNRAVCQVEDCRADLSNAKDYHRRHKVCDVHSKASRALVGSVMQRFCQQCSRFHILQEFDEGKRSCRRRLAGHNKRRRKTHPDPTVAHGGSLNDEKGSSYLLMSLLRILSNMHSNSSDHTRNQDVLSNLLRNLASMAGTINGRSIASLLEGTHDLVKAGTSAAAQNVPNINSNGPIHEDPPRVQCESVPAYDMSHECISLGNGGIGSSKPPSGPQSSSAIWSRDIVPPQWVAAETTICKNGLNNIDLNSVYDDLQDNIDNPSNSCPPVPSGIGCLDHPACVQHDSLRSSPPQTSRNSDSTSTQSPSCSSGEAQSRTDRIIFKLFGKYPNDFPLVLRSQILNWLSHSPTEIESYIRPGCIILAVYLRLENSAWEELCYDLGSSLRKLLAASNDSFWRTGWVYARVQHSVAFLYNGLVVLDVPLHLKSRQNCQILCVKPLAVSSSSNAQFTVKGFNLFLSGTRLLCALEGKYLVQDSYDFIDSSDTAVEHDEIQQVSFSCHIPNVTGRGFIEVEDNGLSSCSFPFIVAEQEICSEICKLDNVIEAAESAADDIQVKTKLMEEKTRALYFIEEMGWLLHRCRVKVRLGSMTPVQDHFHFNRFKWLVGFSMDHDWCAVIKKLLEIIFEGVVGTGEHNSVELALIDLGLLHIAVKRSCKPMVELLLRFVPVKASDGGHRKETQVDKSLDRFLFRPDAFGPAGLTPLHVAASMNGSENVLDALTDDPGMVGIEAWKSARDSTGLTPYDYASLRGYYSYIHLVQRKTRKKHENQHVLDIPSTLVDCNIKQKQSDGHRSSKVSSLQTEKIETTTTTHHCGQCQRKLAYGGGTRKVALVYRPAMLSMVAIAAVCVCVALLFKSSPKVDYVFQPFRWESLKYGSM 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1451 1006 SUPERFAMILY SBT domain 135 215 IPR036893 GO:0003677|GO:0005634
Lal4g1451 1006 MobiDBLite consensus disorder prediction 59 79 - -
Lal4g1451 1006 MobiDBLite consensus disorder prediction 201 224 - -
Lal4g1451 1006 Coils Coil 672 692 - -
Lal4g1451 1006 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 7 1005 IPR044817 GO:0003677
Lal4g1451 1006 Gene3D - 745 904 IPR036770 -
Lal4g1451 1006 MobiDBLite consensus disorder prediction 416 442 - -
Lal4g1451 1006 Pfam SBP domain 137 210 IPR004333 GO:0003677
Lal4g1451 1006 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 7 1005 - -
Lal4g1451 1006 SUPERFAMILY Ankyrin repeat 775 886 IPR036770 -
Lal4g1451 1006 ProSiteProfiles Zinc finger SBP-type profile. 134 211 IPR004333 GO:0003677
Lal4g1451 1006 Gene3D - 127 198 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1451 Lal-Chr4 18665307 18675811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1451 9 1005 SBP-box Gene Family AT3G60030 49.206 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lal4g1451 SBP 2.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1451 - - gmx:100776125 1483.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1449 17 15888645 15896743 Lal4g1451 4 18665307 18675811 LSH
Lal19g1153 19 15057287 15066641 Lal4g1451 4 18665307 18675811 PCT
Lal4g1451 4 18665307 18675811 Lal19g1153 19 15057287 15066641 PCT