Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1443 TTCTTAGAAAGTAAGAATCTTTATGGTTTGTTTCTTCATAATGATTTGAAATTTGCTCCAGAATTTGAGGCCAAAAAGGATTCTCCTTTTAGGCGCAAGCCAAAAAATAACAACGCATTTGAGTCTTCTGGCACTCCGATAAGTAGAAAGGTATCAGCTAGATGGGATCCAGTTGAAGCATGTCGGCCGATAATTGATGAAGCGCCTGTATTTCATCCGACTATTGAGGAATTTGAAGATACACTGAATTACGTAGCAAAAATACGCCCCCTAGCTGAACCCTATGGCATATGCAGGATCGTCCCTCCACGTTGCTGGGCTCCACCATGCCCTCTTAAGGAGAAAGGCTTGTGGGAAAATGCTAAATTTCCTACCCGAATTCAGCATATTGATTTGCTTCAAAATAGGGAGCCCATGAGAAAGAAAAGTAGGGGAAGGAAACGAAAACGTAGAAAGCACTCTAAAATGGGCACGTGTAGGAGACCTGCCAATTCAAATTCTGAAGCTAATAATGCTTCTGATCCTGATGAGAAGTTTGGATTCCATTCAGGGTCGGACTTCACGCTTAAAGACTTTCAGCAATATGATAAGTTTTTCAAGGAATGCTACTTCAGGTTGAAAGACACTAATGGAGATGGAAAAATTAGTGATAATAACCACCAAAAGAGATGGGAGCCCTCTGAGGAGGAAATTGAAGGTGAATACTGGCGAATAATCGAGCAACCAACTGATGAGGTTGAGGTGTATTATGGAGCTGATTTGGAAAGTGGTGCACTTGGAAGTGGTTTTCCGAAGGCATCATCCTTAGCTAAGAGCGATTCAGATCAGTATGCCCTATCTGGCTGGAATCTCAATAACTTCCCCCGACTCCCAGGTTCCGTACTAAGTTTCGAAGGAAGTGAGATATCAGGAGTTCTAGTGCCATGGCTATATGTTGGCATGTGCTTTTCTTCATTTTGCTGGCATGTTGAGGATCATCACCTCTATTCGCTTAATTATCTGCACTGGGGTGACCCAAAAGTATGGTACGGAATACCTGGAAGCCATGCTTCTACTTTTGAAGATGCAATGAGGAAGCACTTGCCAGATTTATTTGAGGAAAATCCAAATCTACTCAATGAACTGGTTACTCAGTTATCTCCTTCAATTCTTAAATCTGAGGGAGTGCCTTTATATCGCACCGTACAACATTCGGGGGAATTTGTTATTACATTTCCAAGGGCATATCACTCTGGCTTTAACTGCGGCTTCAACTGTGCCGAGGCAGTGAATGTGGCTCCTGTTGATTGGTTAATGCATGGCCAGAATGCCGTTGAGCTTTACAGTTTACAGTGCCGTAAGACATCATTGTCACATGACAAGCTTTTATTTGGATCAGCACATGAGGCTGTACGAGTCCTTGCAGAGCTAGCTCATCTTGAAAAGGAAACTCCAAAAATTTTGAAATGGAGAAGTGTCTGTGGAAAAGATGGAGTTCTTACCATGGCAGTTAAGAGAAGAATGAAAATGGAAGAAGAGAGGCTGCAGTGTCTACCAACTGATTTAAAGTTGTTGAAGATGGACAGTGACTTTGATTTGAACAAGGAAAGGGAATGCTTTTCTTGCTTCTACGACTTGCACCTTTCTGCTGTAGGTTGTGAGTGCTCTCCTGATAGATATTCTTGTCTTAAGCATTCAAATTTGTTTTGCTCGTGTGGAATGGACAGAAGATTTGTTCTACATCGTTATACTGTAGATGAGCTAAATAAATTGGTTGAAGCCTTAGAAGGACAATCACTTGCTACTGAAGTTTGGGCAAATAAAAACTTCGGAATGGTTTATTCCGATGCCAATAAGGTTTCCATATGTAAACCATATGTGGAGAGAGACATGTACAAGAGCAAGAGTCGTGACGAAGGGGAAAGCTCAACTGGTTGTGCAGGATCAAAGGATAGCCACAATGACAATATTAATGATAAAAAAATGGTCATAAGCAATGAAGATAAGGTAGATCAGGCTGGTTGTCTTGATTTGAATCTCGGAGTTATATCCGGTGAAAATGAAAATTACTTGCTGCATATTTCGGATAACCATTATAATAAGGGTGTTTTAATAGAGGAAAAAGTATGCTGTTCAGAGTCTCGAAAGGAACAAGGCAATGTGAAACTTGACGGTGATGGTAACCTATCACATCCGTTTTCAGTTTCAAAGACAGATTTTTCATCAAGGGATGTACACAATTCTTGTATGTTTGATTGTGGAAAGTTTGGGTTGGATCTTCAAATGGATTCGAATTCAGGAAAGCAGACCAACAATGTTTTCAAAATGGAAATCATAGACATGAGAAATACAAGTATATCGTCGACTGAGGAAAGCCACCTACTTCAAATCTTTGGTACTTCTGTCAAGCCCATAAGTTTGGGATCGGTTATTTATGGAAAGCTGTGGTGCAATAAGCACACGATATATCCAAAAGGATTCAAGAGTCGAGTTGATTTCTTTAGCATTCTTGACCCTCCAAGAATCTGTGGATACATTTCTGAAATCGTTGATGCTGGATTTCTTGGGCCTGTTTTCAAGGTTACCATGGAAGAATGCCCGAGTGAGACTTTCACAGATATCTCAGTAGATAAGTGCTGGGAATCAGTTCTAAAGAGACTACATAACGAAATCACGAGGCGAAGGAGTCTAGGTGAACAACAACTCCCTCCCTTAGAGCTTCTGAGAAACATAAACGGTCTTCGGATGTTTGGCTTTCTTTTACCATCCATCACTCAGGCCATCGAAGCTCAAGATCCCAGTTATCGGTGTCTAGAATACTGGAACCACAAACTTGTCCCTGCATCTTCAGGCAGTGATATCGATAACACTAAGTCGACACATGTTTCAAGTAACTTACTAGGTAATATCAATACCAAAGTTTTCGGTATCAATTTGATTAAGCAGGAACTTGAGATGAAATCAATACTATAA 2952 0.4075 FLESKNLYGLFLHNDLKFAPEFEAKKDSPFRRKPKNNNAFESSGTPISRKVSARWDPVEACRPIIDEAPVFHPTIEEFEDTLNYVAKIRPLAEPYGICRIVPPRCWAPPCPLKEKGLWENAKFPTRIQHIDLLQNREPMRKKSRGRKRKRRKHSKMGTCRRPANSNSEANNASDPDEKFGFHSGSDFTLKDFQQYDKFFKECYFRLKDTNGDGKISDNNHQKRWEPSEEEIEGEYWRIIEQPTDEVEVYYGADLESGALGSGFPKASSLAKSDSDQYALSGWNLNNFPRLPGSVLSFEGSEISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGIPGSHASTFEDAMRKHLPDLFEENPNLLNELVTQLSPSILKSEGVPLYRTVQHSGEFVITFPRAYHSGFNCGFNCAEAVNVAPVDWLMHGQNAVELYSLQCRKTSLSHDKLLFGSAHEAVRVLAELAHLEKETPKILKWRSVCGKDGVLTMAVKRRMKMEEERLQCLPTDLKLLKMDSDFDLNKERECFSCFYDLHLSAVGCECSPDRYSCLKHSNLFCSCGMDRRFVLHRYTVDELNKLVEALEGQSLATEVWANKNFGMVYSDANKVSICKPYVERDMYKSKSRDEGESSTGCAGSKDSHNDNINDKKMVISNEDKVDQAGCLDLNLGVISGENENYLLHISDNHYNKGVLIEEKVCCSESRKEQGNVKLDGDGNLSHPFSVSKTDFSSRDVHNSCMFDCGKFGLDLQMDSNSGKQTNNVFKMEIIDMRNTSISSTEESHLLQIFGTSVKPISLGSVIYGKLWCNKHTIYPKGFKSRVDFFSILDPPRICGYISEIVDAGFLGPVFKVTMEECPSETFTDISVDKCWESVLKRLHNEITRRRSLGEQQLPPLELLRNINGLRMFGFLLPSITQAIEAQDPSYRCLEYWNHKLVPASSGSDIDNTKSTHVSSNLLGNINTKVFGINLIKQELEMKSIL 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1443 983 Pfam F/Y-rich N-terminus 798 842 IPR003888 GO:0005634
Lal4g1443 983 ProSiteProfiles FYR domain FYRN motif profile. 787 845 IPR003888 GO:0005634
Lal4g1443 983 Pfam jmjN domain 69 102 IPR003349 -
Lal4g1443 983 ProSiteProfiles JmjN domain profile. 68 109 IPR003349 -
Lal4g1443 983 SMART fyrc_3 851 948 IPR003889 GO:0005634
Lal4g1443 983 MobiDBLite consensus disorder prediction 627 647 - -
Lal4g1443 983 Gene3D - 792 931 - -
Lal4g1443 983 MobiDBLite consensus disorder prediction 159 173 - -
Lal4g1443 983 Pfam F/Y rich C-terminus 849 935 IPR003889 GO:0005634
Lal4g1443 983 SMART cupin_9 276 442 IPR003347 -
Lal4g1443 983 Gene3D Cupin 53 426 - -
Lal4g1443 983 Pfam C5HC2 zinc finger 532 584 IPR004198 -
Lal4g1443 983 ProSiteProfiles JmjC domain profile. 276 442 IPR003347 -
Lal4g1443 983 PANTHER LYSINE-SPECIFIC DEMETHYLASE 642 977 - -
Lal4g1443 983 PANTHER LYSINE-SPECIFIC DEMETHYLASE 22 647 - -
Lal4g1443 983 Pfam JmjC domain, hydroxylase 309 425 IPR003347 -
Lal4g1443 983 SMART fyrn_3 801 845 IPR003888 GO:0005634
Lal4g1443 983 ProSiteProfiles FYR domain FYRC motif profile. 847 937 IPR003889 GO:0005634
Lal4g1443 983 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 22 647 - -
Lal4g1443 983 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 642 977 - -
Lal4g1443 983 SUPERFAMILY Clavaminate synthase-like 277 465 - -
Lal4g1443 983 MobiDBLite consensus disorder prediction 140 158 - -
Lal4g1443 983 MobiDBLite consensus disorder prediction 132 177 - -
Lal4g1443 983 SMART JmjN_1 67 108 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1443 Lal-Chr4 18608451 18618806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1443 76 939 JUMONJI Transcription Factor Family AT4G20400 49.943 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lal4g1443 JmjC 1.5e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1443 - - gmx:100801775 1481.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g1156 21 14213847 14222866 Lal4g1443 4 18608451 18618806 LSH