Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1423 ATGGGTCGTTCAAGATTGACATTGAAACACATATCAAATGATGCAATTCGGAAATCAACTTTTATGAAAAGAAGTGATGGACTTATGAAGAAAGTGTTTGAATATTGCACATTGGGTGATATAGCAGAAGCTTGTTTGATAGTTTTTGATAATGATGATGATGTCAATGGTGATCATCAACCAATGATGACTTGGCCTGAAGATCTCACAAAGATACACTCCATAATTCAAAAATATGAGAATCAAAAGAATGAAGAGGAGGAACCTTCAACTATGTTTGGTATCCAAGAGTATTTTGAGATTAAGAAGAACTTAGTTGAAGCTGATATTTCAAAAGTGAGAAAAGAGATTCTTAAGGTTAAATATCCAACTTGGGATCAAAGATTTAATAACCTTGAAGATGAGCCACTTTTGAACTTCATTGGTGTGTTGGATGAAAAAATTGCAGCATGCATTCAAAGAAAGAAGTTGTTGAAAATTCAGAATGAATTGGAAGTCATCTTGGCTCAAACAAATAATGCTGCCTCAAACTCAAATCAAGCTAGTTTAATGCAGAACAACTTTCAGAGCCAACTTATCCCTATTCCGATGGATAATCAAGTCGATTCGTCGTTCGATTTGTCTCAACAAGTGAATTTTGCTGATAATGTAGATGTAGCTCTAGATAGTACTAAACAAAGTGATGCAGCTGAGCCAGATTGGGATAGTCTACATGAGCTTCTTGATTGTGCTAGTCAAGGTGGTTTTTCTGAGGATAGGACTAGTGACCTACATGAGCTTATGAGTTGTAATAGACAACCTAGTAACTTTGTTTACATCAATGATTTTTCATAG 834 0.3501 MGRSRLTLKHISNDAIRKSTFMKRSDGLMKKVFEYCTLGDIAEACLIVFDNDDDVNGDHQPMMTWPEDLTKIHSIIQKYENQKNEEEEPSTMFGIQEYFEIKKNLVEADISKVRKEILKVKYPTWDQRFNNLEDEPLLNFIGVLDEKIAACIQRKKLLKIQNELEVILAQTNNAASNSNQASLMQNNFQSQLIPIPMDNQVDSSFDLSQQVNFADNVDVALDSTKQSDAAEPDWDSLHELLDCASQGGFSEDRTSDLHELMSCNRQPSNFVYINDFS 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1423 277 Gene3D - 14 102 IPR036879 GO:0003677|GO:0046983
Lal4g1423 277 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal4g1423 277 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal4g1423 277 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 53 IPR002100 GO:0003677|GO:0046983
Lal4g1423 277 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Lal4g1423 277 PANTHER MADS BOX PROTEIN 4 224 - -
Lal4g1423 277 PANTHER PROTEIN, PUTATIVE-RELATED 4 224 - -
Lal4g1423 277 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Lal4g1423 277 SUPERFAMILY SRF-like 1 81 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1423 Lal-Chr4 18434339 18435954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1423 1 211 Type I MADS-box Gene Family AT5G55690 26.147 8.41e-14 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal4g1423 SRF-TF 9.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1423 - - lang:109327505 201.83