Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1422 ATGAAGCAGTCTCTGGATCCTTCATCTTTGGGTACTTCCATGTTTCGGTCTATAAATATGCCTAGAGAGCCGGGGCGGGCTGCATGGGATGTTTTATCTGGATCCGATTCCTACCATGCCTCATCTGATGCTAGCCTCTTTTCTAGCTCGTTACCTGTTCTTCCACATGAAAAATTGAACTTAAATGACACGAAAAACAGTTATCAATTAGTTGATGACTTCTCATCTGGATTTAAAAAGCTCCATCAAGATATTCGGGGCGATGATTCACCTGAAGATGTTGATACTAATCCAATTGGAGTCATGCTTCCCGATGACGAGGATGAACTTTTAGCAGGTATAATGGATGATTTTGACCTAAGTGGTTTGCCCGGTTCCCTTGAGGACTTGGAAGAGTATGATCTTTTCGGTAGTGGCGGAGGCATGGAACTAGAAACTGACCCACAGGAAAGTCTCAGTGTGGGTATGTCTAAGTTAAGCTTCTCTGATAACACTGCTGGCAATGCGTTGCTTCCTAATTCTTTTCCTAATGGTGTGGGAGCTGTTGTTGGAGAACATCCATTGGGAGAGCATCCATCTCGAACATTATTTGTTCGAAATATTAACAGTAATGTTGAGGATTCCGAGCTGAAAGCTCTTTTTGAGCAATATGGTGATATTAGAACCCTCTTCACTGCTTGTAAACATCGGGGGTTTGTAATGATATCATATTATGACATCCGTGCTGCTCGAACAGCCATGCGTGCATTACAAAACAAACCTCTTCGGCGCAGGAAACTTGACATTCACTTCTCAATACCAAAGGACAATCCATCAGATAAGGATATCAATCAAGGAACCTTGGTAGTTTTCAATTTGGATCCTTCGGTTTCAAATGAAGACCTTCGTCAAATATTTGGGGCATATGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCATAAGTTTATTGAGTTTTATGATGTCAGGGCTGCTGAAGCTGCACTTAAGTCATTGAATAGGAGTGACATAGCTGGTAAACGCATAAAGCTGGAGCCTAGTCGCCCTGGAGGAGCTCGTCGAAATTTGACGCTCCAACTTAATCAAGATCTTGATCAAGATGAATCTCGGAGTTTCCGATATCAAGTGGGTTCTCCTGTGGCAAACTCTCCACCAGGTAATTGGTTCCAATTCAGCAGCCCTGTTGAGCAGAATTCAATGCAAACTATGAATAATTCTCCCGGGTCTAGGATCATAGGCCCGACAACAGGCAACCATTTTTCAGGGTTGGCTTCAATTTTGCAACCTCAGGTATCAAACAATGTGAAGGGTGCAGCTATCGGCAAGGACTTAAGAACTAGTAGTTATGAAGAGCACATATTTACCAGTATGAATTCAACAAATGGTACGACTTTTCAGTCACATTCACTTCCAGACCCAAAGTTCAGCCAATATCGTGGACCTTTATCTTCTTTTGGTCAATCAACGTCAAATGGATTGTCAATTGAGACCTTGTCTGGGCCACAGTTTCTATGGGGAAGTCCAACCCTCTACTCAGATCATAACAAACCTTCAGCTTGGCCAAGACCATCTGCTGGGCATCCATTTACATCGAATGGAAAGAGTCACGCCTTCCCATATTCGACTCAGAATAATTCCTTCATTGGTTCATCCCAGCATCTTCACCGTCATCATGTTGGCTCTGCTCCATCTGGTTTGCCGTTTGAGCGGCGCTTCGGTTTCCTTCCCGAGTCACCTGAAACTTCATTCGTGAGTAATATTGGTTATGGAGGAATGAGTCTCGGGCACAACGATGGAAATTACATGGTTAATATGGGTGGGTCTGTTAATGCTGGGATTAATATACCAAGAAATTTGCCTGATAATGGTTCATCAAGCTTCAGAATGAGATCTTCTCCCCGGCTTAACCCTGTGTTTTTGAGTAATGGTCCTTACCCCGGACTGCCACCTACTACCTTGGAGAGTTTGACTGACCGTGCTCGTGGTAGATGGATAGATAACAATGGTAGTCAAGTTGATAGCAAGAAGCAATTTCATCTTGACTTGGATAAGATTAAAAATGGCGAAGATGCAAGGACTACATTAATGTTAAAGAATATCCCTAATAAGTACACCTCGAAAATGTTATTAGCTGCCATTGATGAAAATCACCAGGGTACCTATGATTTTATCTATCTGCCAATTGACTTTAAGAATAAATGCAACGTGGGTTATGCGTTTATCAACATGCTGTCACCTTTGCTTATTATTCCATTCTACGAGACATTCAATGGGAAGAAATGGGAGAAGTTTAACAGTGAAAAAGTTGCTTCTTTGGCATATGCTCGAATCCAAGGAAAGACTGCCCTTGTGAGCCACTTCCAAAATTCAAGTTTGATGAATGAAGATAAGCGCTGCCGCCCGATTCTCTTCCACTCAGAGGGTCCTGAAGCTCGTGATCAGATCATACAAGAGCATCTTCCTTCCAATAATCTAAATGTTCTCGAACATAGGCCAAGTGAGTTACACCCTCCAAATGACGATCTTTCCGTGAGCTTGGAGACAAATTAA 2559 0.4263 MKQSLDPSSLGTSMFRSINMPREPGRAAWDVLSGSDSYHASSDASLFSSSLPVLPHEKLNLNDTKNSYQLVDDFSSGFKKLHQDIRGDDSPEDVDTNPIGVMLPDDEDELLAGIMDDFDLSGLPGSLEDLEEYDLFGSGGGMELETDPQESLSVGMSKLSFSDNTAGNALLPNSFPNGVGAVVGEHPLGEHPSRTLFVRNINSNVEDSELKALFEQYGDIRTLFTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLTLQLNQDLDQDESRSFRYQVGSPVANSPPGNWFQFSSPVEQNSMQTMNNSPGSRIIGPTTGNHFSGLASILQPQVSNNVKGAAIGKDLRTSSYEEHIFTSMNSTNGTTFQSHSLPDPKFSQYRGPLSSFGQSTSNGLSIETLSGPQFLWGSPTLYSDHNKPSAWPRPSAGHPFTSNGKSHAFPYSTQNNSFIGSSQHLHRHHVGSAPSGLPFERRFGFLPESPETSFVSNIGYGGMSLGHNDGNYMVNMGGSVNAGINIPRNLPDNGSSSFRMRSSPRLNPVFLSNGPYPGLPPTTLESLTDRARGRWIDNNGSQVDSKKQFHLDLDKIKNGEDARTTLMLKNIPNKYTSKMLLAAIDENHQGTYDFIYLPIDFKNKCNVGYAFINMLSPLLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKTALVSHFQNSSLMNEDKRCRPILFHSEGPEARDQIIQEHLPSNNLNVLEHRPSELHPPNDDLSVSLETN 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1422 852 CDD RRM3_MEI2_like 698 783 IPR034454 -
Lal4g1422 852 PANTHER RNA RECOGNITION MOTIF-CONTAINING 3 839 - -
Lal4g1422 852 MobiDBLite consensus disorder prediction 531 545 - -
Lal4g1422 852 PANTHER PROTEIN MEI2-LIKE 2 3 839 - -
Lal4g1422 852 Gene3D - 278 376 IPR012677 -
Lal4g1422 852 CDD RRM2_MEI2_like 278 348 - -
Lal4g1422 852 SMART rrm1_1 195 263 IPR000504 GO:0003723
Lal4g1422 852 SMART rrm1_1 280 348 IPR000504 GO:0003723
Lal4g1422 852 SMART rrm1_1 697 773 IPR000504 GO:0003723
Lal4g1422 852 SUPERFAMILY RNA-binding domain, RBD 697 781 IPR035979 GO:0003676
Lal4g1422 852 SUPERFAMILY RNA-binding domain, RBD 191 354 IPR035979 GO:0003676
Lal4g1422 852 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 267 IPR000504 GO:0003723
Lal4g1422 852 MobiDBLite consensus disorder prediction 518 545 - -
Lal4g1422 852 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 260 IPR000504 GO:0003723
Lal4g1422 852 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 281 346 IPR000504 GO:0003723
Lal4g1422 852 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 279 352 IPR000504 GO:0003723
Lal4g1422 852 Pfam RNA recognition motif 2 695 791 IPR007201 -
Lal4g1422 852 MobiDBLite consensus disorder prediction 832 852 - -
Lal4g1422 852 CDD RRM1_MEI2_like 193 269 IPR034453 -
Lal4g1422 852 Gene3D - 185 277 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1422 Lal-Chr4 18425926 18433599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1422 189 387 Eukaryotic Initiation Factors Gene Family AT1G71770 25.561 1.01e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1422 - - lang:109328336 1498.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1408 17 15582351 15590219 Lal4g1422 4 18425926 18433599 LSH