Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1421 ATGTTTATGTACCTACCAAACCCAAAAATCTGCTTCAAAACCATCCACTTTATACACCAACCAATGCAAAAATCTCCATTGAATTCAAAGAGAAAATACTGTACCTTGAGATCGTTGGAACTTGAAGGACTTTTGGGGATTGATGCAGGTAAAGCACAAAACCCTGAACTCCACACAGCTTCCATGAAATCCATTCATTCCATTATCTCATTCCTTCTATCCAAAGGTATCCATCAAAAGGACTTACCAAGGATTTTTGGGATGTGCCCAAAGATTCTCACTTCTAATATCAATACAGATCTAAACCCAGTTTTTGATTTTCTATTACAAGAACTTCAAGTCAAAGATCATAACTTTATAAAGATTGTTAAAAAGAACCCAAGATTTCTTACTTCAAGTGTGATAAATCAGCTTAAGCCAGCTTTGTTTTATCTTAAGAAACTTGGGTTCAAGGATTTAGCAGCTTTGACTTATCAAGATTCAATTTTGTTGGTGTCTAATGTAGAAATTAGAGGAAAATTGGAGGAGCTGAAAGATTTGGAGAAAAGGATAAAGCCTAGGCACTTGGAGATTATGCAAAGTGGAATTGATTTACCTTTGTCAGTGATGCTTAAAAGCACTGATGAAGATTTTAGGGAGCTGATAAATCAAGGAAGCCCAGGCATAGCTATAAGATTAAGATACGAAGAAAACAAGGATATCTTATCACCATATGAATTTAGTACTCAATTCGATTCGGTTCCTATTGTCAACCCTACAACACCAGACACAGATAACCCATATCCTACATTAAACCCAACATCTCCTCAAGCACCTGACACAACAGGACCAGGGCAAACCCCTACAACTCCTGACACAACCCCTACAACTCCTGACACAACCCCATACACAACCCCTACAACTCCAAACACAAACCCTACAAGCCCATACACAAACCCTACAACTCCTACAAGCCCATACACAAACCCTACAACTCCTACAAGCCCAAACACAAACCCTACAACCCCAACTAACCCATACACAACACCAAGTACAACTCCACCAAGCCCAAATGCAAATCCCACAGCCCCAACCACTCCAACTACTGCATCAGCAAGTGGACAATGGTGTGTGGCAAGCCAATCAGCCACTGAGAAAGCTCTAAAAGTTGCTATTGACTATGCTTGTGGGTATGGAGGTGCAGATTGTTCAGCACTTCAACCAGGTGCAAGCTGTTATAACCCAAATACTATAAGAGACCATGCTTCTTATGCATTCAATGACTACTACCAGAAGAATCCAGCACCTACAAGCTGTGCATTTGGAGGAACAGCAACACTTACAAACAAAGATCCAAGTAATGGGAACTGCCACTATGCTTCATCAAAAACAACAAGCATGAGTCCACCAACATATGTAAGTCCACCAAATCCACCAAGTCCACCAGCTACGATGACCCCACCAGCTACAATGACCCCAAGTGCACCAAATACTATGATTCCAACCACACCACCAAGCATGACAATTCCTGGTGGAGCATCAGTCTATGGACCAGCAACAAGCCCTAACATAGCAACATCTGCTTCTTATTCAACCTTGCTTATGTTTACCTTATTTGGCATTTGGGCTTCATTTCATGTAGATATTTACATCTAG 1635 0.408 MFMYLPNPKICFKTIHFIHQPMQKSPLNSKRKYCTLRSLELEGLLGIDAGKAQNPELHTASMKSIHSIISFLLSKGIHQKDLPRIFGMCPKILTSNINTDLNPVFDFLLQELQVKDHNFIKIVKKNPRFLTSSVINQLKPALFYLKKLGFKDLAALTYQDSILLVSNVEIRGKLEELKDLEKRIKPRHLEIMQSGIDLPLSVMLKSTDEDFRELINQGSPGIAIRLRYEENKDILSPYEFSTQFDSVPIVNPTTPDTDNPYPTLNPTSPQAPDTTGPGQTPTTPDTTPTTPDTTPYTTPTTPNTNPTSPYTNPTTPTSPYTNPTTPTSPNTNPTTPTNPYTTPSTTPPSPNANPTAPTTPTTASASGQWCVASQSATEKALKVAIDYACGYGGADCSALQPGASCYNPNTIRDHASYAFNDYYQKNPAPTSCAFGGTATLTNKDPSNGNCHYASSKTTSMSPPTYVSPPNPPSPPATMTPPATMTPSAPNTMIPTTPPSMTIPGGASVYGPATSPNIATSASYSTLLMFTLFGIWASFHVDIYI 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1421 544 Gene3D Transcription termination factor 3, mitochondrial 26 219 IPR038538 -
Lal4g1421 544 Pfam mTERF 61 151 IPR003690 GO:0003690|GO:0006355
Lal4g1421 544 MobiDBLite consensus disorder prediction 455 499 - -
Lal4g1421 544 MobiDBLite consensus disorder prediction 464 482 - -
Lal4g1421 544 SMART mt_12 50 78 IPR003690 GO:0003690|GO:0006355
Lal4g1421 544 SMART mt_12 120 151 IPR003690 GO:0003690|GO:0006355
Lal4g1421 544 SMART mt_12 83 115 IPR003690 GO:0003690|GO:0006355
Lal4g1421 544 MobiDBLite consensus disorder prediction 340 355 - -
Lal4g1421 544 MobiDBLite consensus disorder prediction 246 318 - -
Lal4g1421 544 Gene3D - 363 463 - -
Lal4g1421 544 MobiDBLite consensus disorder prediction 246 365 - -
Lal4g1421 544 Pfam X8 domain 368 439 IPR012946 -
Lal4g1421 544 PANTHER CGI-12 PROTEIN-RELATED 19 169 IPR003690 GO:0003690|GO:0006355
Lal4g1421 544 PANTHER CGI-12 PROTEIN-RELATED 172 217 IPR003690 GO:0003690|GO:0006355
Lal4g1421 544 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 172 217 - -
Lal4g1421 544 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 19 169 - -
Lal4g1421 544 SMART X8_cls 368 452 IPR012946 -
Lal4g1421 544 MobiDBLite consensus disorder prediction 483 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1421 Lal-Chr4 18407568 18414285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1421 327 452 Glycoside Hydrolase AT4G29360 43.846 1.61e-25 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lal4g1421 mTERF 1.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1421 K15032 - lang:109326189 296.589
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1405 17 15569231 15570172 Lal4g1421 4 18407568 18414285 LSH