Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1417 ATGATGTCACGTTCAAGGCATGTTCATGTTCATAATGTTGGTGTTAGTAGTAGTAGTAGTAGCAGTGGAAGAACACGTGTGGGAAAGTATGAGTTGGGTAAGACTATTGGTGAAGGGAATTTTGCAAAGGTGAAGTTTGCAAGGAACATTGAAACTGGAGAAAGTGTTGCTATCAAGATTCTTGATAAGGAAAAAATTCTTGAGCACAAAATGATTGGCCAGATAAAACGAGAAATATCGACAATGAAACTGATTAGACACCCGAACGTCATACATATGCATGAGGTGATGGCAAGCAAGACAAAGATATACATTGTATTGGAATTTGTGACTGGTGGCGAGCTTTTTGATAAAATTGCAAGCAATGGAAGGTTGAAAGAAGACGAAGCGAGAAAATATTTTCAACAGCTTATATGCGCTGTGGATTACTGTCATAGTAGAGGTGTTTGCCATAGAGACCTAAAGCCTGAGAACTTGTTGCTGGATGCTAATGAAGTGCTTAAAGTATCGGATTTTGGATTGAGCGCATTGCCTCAACAAGTTCGGGAAGATGGGCTGCTTCATACGAGATGTGGTACGCCAAATTATGTTGCGCCCGAGGTGATCCACAATAAAGGCTATGATGGTGCAAAAGCAGATCTCTGGTCATGTGGCGTTATTCTTTTCGTTTTAACGGCTGGCTATTTGCCCTTCGAAGAAAACAATGTCATGGCTTTATATAAAAAGATTTTCAAGGCAGAGTTTTCGTGTCCTCCGTGGTTCTCTTCCGGTGCTAAGAAACTAATCAACAGAATCCTTGATCCCAATCCTGCTACCAGGATAACAATTGCTGAGATCATTGAGAATGAGTGGTTCAAGAAGGGATATAAGCCTCCTAGATTCGAGCAGGCTAATGTTAGTCTCGAAGATATAAATTCTATTTTCGATGAATCAATGAATTCACAAAATCTTGTTGTCGAGAGGCGCACGGAGAGTCCTGTGGCGCCTGTGACATTGAATGCATTCGAACTTATCTCTACATCTCAAGGCCTCAATCTAAGTAATCTTTTCGAGAAGCAAATGGGAATTGTTAAACGGGAAACGAGATTTACTTCGAAATGTTCAGCAAATGAGATAATTGCGAAAATTGAGCAAGCTGCAGGGCCTCTGGGTTTTGATGTTAAGAAGAACAATTGTAAGTTAAAAATTCAAGGGGAAAAGACTGGACGCAAAGGTCATCTTTCTGTAAACACTGAGATCTTTGAGGTGGCTCCTTCACTTTACATGGTCGAGCTGCGTATGTCGGATGGAGATACTCTGGAATTTCACAAGTTCTACAAGAATCTAGCTTCTAGGCTGAAAGATGTAGTTTGGAAAGCAGAACCTATTGATGAAGAAAATGTTGGTACAGGTGCATCAAAATAA 1404 0.4046 MMSRSRHVHVHNVGVSSSSSSSGRTRVGKYELGKTIGEGNFAKVKFARNIETGESVAIKILDKEKILEHKMIGQIKREISTMKLIRHPNVIHMHEVMASKTKIYIVLEFVTGGELFDKIASNGRLKEDEARKYFQQLICAVDYCHSRGVCHRDLKPENLLLDANEVLKVSDFGLSALPQQVREDGLLHTRCGTPNYVAPEVIHNKGYDGAKADLWSCGVILFVLTAGYLPFEENNVMALYKKIFKAEFSCPPWFSSGAKKLINRILDPNPATRITIAEIIENEWFKKGYKPPRFEQANVSLEDINSIFDESMNSQNLVVERRTESPVAPVTLNAFELISTSQGLNLSNLFEKQMGIVKRETRFTSKCSANEIIAKIEQAAGPLGFDVKKNNCKLKIQGEKTGRKGHLSVNTEIFEVAPSLYMVELRMSDGDTLEFHKFYKNLASRLKDVVWKAEPIDEENVGTGASK 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1417 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Lal4g1417 467 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal4g1417 467 ProSiteProfiles Protein kinase domain profile. 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal4g1417 467 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 24 457 - -
Lal4g1417 467 ProSitePatterns Protein kinases ATP-binding region signature. 36 59 IPR017441 GO:0005524
Lal4g1417 467 Pfam NAF domain 329 389 IPR004041 GO:0007165
Lal4g1417 467 SUPERFAMILY Protein kinase-like (PK-like) 27 322 IPR011009 -
Lal4g1417 467 Gene3D Transferase(Phosphotransferase) domain 1 110 292 - -
Lal4g1417 467 MobiDBLite consensus disorder prediction 1 26 - -
Lal4g1417 467 CDD CIPK_C 333 448 - -
Lal4g1417 467 Gene3D Kinase associated domain 1, KA1 327 452 - -
Lal4g1417 467 PANTHER SERINE/THREONINE KINASE 24 457 - -
Lal4g1417 467 ProSiteProfiles NAF domain profile. 327 351 IPR018451 GO:0007165
Lal4g1417 467 Gene3D Phosphorylase Kinase; domain 1 19 109 - -
Lal4g1417 467 SMART serkin_6 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal4g1417 467 MobiDBLite consensus disorder prediction 10 26 - -
Lal4g1417 467 CDD STKc_SnRK3 29 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1417 Lal-Chr4 18377322 18383702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1417 14 460 CBL-interacting serine-threonine protein kinases AT1G01140 67.108 0.0 640
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lal4g1417 Pkinase 1.2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1417 - - gmx:100788746 783.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1417 4 18377322 18383702 Lal4g1417 4 18377322 18383702 ECH
Lal17g1404 17 15557489 15563393 Lal4g1417 4 18377322 18383702 LSH
Lal14g1818 14 17913344 17916141 Lal4g1417 4 18377322 18383702 PCT
Lal7g1251 7 18040134 18042226 Lal4g1417 4 18377322 18383702 PCT
Lal19g1373 19 16574583 16576854 Lal4g1417 4 18377322 18383702 PCT