Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1408 ATGAACGACGACGTTTCCGATACCCACAAAATCCGAAACATGTGTATCCTCGCACACGTGGATCACGGCAAAACCACCCTCGCCGACCACCTAATCGCCGCCGCAGGCGGCGCCTTACTCCATCCCAAACTCGCCGGGCGCGTGAGATTCATGGATTACCTAGACGAAGAACAACGACGCGCCATCACAATGAAATCTTCCTCAATTTCCCTCCATTACAAAGATCACTCCGTCAATCTCATCGATTCTCCCGGCCACATGGACTTCTGCAGCGAAGTCTCCACCGCCGCGCGTCTCAGCGACGGCGCGTTAGTTTTAGTCGACGCCGTCGAAGGCGTTCATATCCAAACCCACGCGGTTCTACGCCAGTGTTGGATTGAGAAACTATCCCCTTGCCTCGTGCTTAATAAAATTGATCGGTTAATCACCGAGCTTAAGTTAACTCCCTCCGAGGCCTACACGCGCTTATCGCGAATTGTTCACGAGGTGAACAATATCGTGAGCGCGTATAAGTCGGAAAAGTATTTATCCGATGTGGATTCTATCGTCGCTGCTGCTGGAGCCAGCGGCAATGAGGATGAAGAGTTTGTGGAAGATGATAATGATGATGAGGAGGATACATTTCAGCCACAGAAAGGTAATGTGGCTTTTGTTTGTGCTTTGGATGGTTGGGGTTTTAGGGTTCATGAATTTGCTGAGTTTTATGCTTCAAAGCTTGGTGCTAGTGTTAATGCCTTACAGAAAGCTTTGTGGGGCCCACGGTATTTTAATCCGAAGACGAAAATGATTGTTGGGAAGAAAGGGATTGCAGGTGTTGGTGGTGGAAAGGTGGCTAAGCCAATGTTTGTACAGTTTGTGTTGGAGCCGCTTTGGCAGGTTTACCAGGGTGCATTAGAGGGGAAAGGGTTGGTTGAGAAAGTTGTTAAGGCGTTTAATTTGTCGATTCCGGCTAGGGAGCTTCAGAATAAGGATCCTAAGGTTGTGCTTCAGGCAATTATGAGTCGTTGGCTACCTCTTTCTGATGCAGTTTTGTCTATGGTGGTGAAGTGTATGCCGGATCCCATTGCGGCACAGTCTTTTCGTGTGTCTCGCTTGCTTCCGAAGCGTGAAGTTGTTGTTAATGTTAGTGATGGGGTTGAGATTGAGATTGATCGGAGTGTGGTGGAAGCTGCGGAGCACGTGAGGAAATCGGTTGAGGTGTGTGATTTGAGACCTGATGCTCCTTGCGTTGCTTTTGTGTCAAAGATGTTTGCCATTCCAGTTAAAATGCTTCCTCCATCGGAGAATGGTTATGGTGATGAAGGAGAGGGTGATTCAGATGAGTGTTTCCTGGCATTTGCTAGGGTCTTTAGCGGGGTTCTTAATGCGGGTCAAAGAGTTTTTGTGCTTTCTGCTTTGTATGACCCATTGAAAGGGGAATCAATGCAAAAACATGTGCAGGAGGCTGAATTGCAATCTTTGTATTTGATGATGGGGCAAGGCTTGAAAGTAGTGAAATCTGCCAAAGCAGGAAATATCATTGCTATCCAAGGCCTTGGCCAGCATATATTGAAAAGTGCTACTCTTTGTTCTACTAGGAACTGTTGGCCTTTTTCGAGTTTGGAATTCCAAGTTGCCCCGACTTTGAGAGTTGCAATTGAGCCTTCTGACCCTGCAGATGTGGGTGCACTGCTGAAAGGATTGAGGCTTCTGAATCGAGCTGATCCATTTGTTGAGGTCCATGTTTCTGCAAGAGGGGAGCATGTTCTTGCTGCTGCAGGGGAAGTTCATCTTGAAAGATGCATAAAGGATTTAAAGGACAGATTCGCAAAAATAAACTTGGAAGTGTCACCGCCTCTTGTGTCATATAAAGAGTCCATCGAAGGGGAGGTATCCAACATGCTGGAGAATTTGAAAGCTCTTCGTAAGAGCTCAGATTATGTTGAGAAAACAACACCCAACGGAAGATGTGTTGTACGTGTGCGTGTGATGAAACTTCCCCTTTCTCTTACGAAGGTGCTACACGAAAGTTCTGATTTACTTGAAGATATCATTGGTTTAAAGTCTGGTCAGACAGTTAAAAGTTTGGAAATCCAGGGAATGAGTATTCTCCAAAAAGATAATCCAACTGAAGTGCTAAAAAAACGTGTAATAGATGCAGTGGAGAGTGATATCATGAGCAGGATTGAGAATGACAAGGACCATACTGACAAGGACCATACTGACAAATGTAAATTACAGTGGTTAAAGCTTTTGAGGAGGATATGGGCACTTGGACCTAGGCAGATTGGTCCCAACATTCTCTTTACTCCTGACATTAAAGCAGCAGAGTGTGGTGATGGATCTGTTCTAATACGTGGTTGTTCTCACATAGCTGAAAGGTTAGGCTTTACGGCTGATTCTAATAGCGCTCACTCTGTCATTGAGACACCTTCAGAGACGAGCCATGCTTTGTACATGGATGTTGAGTATCTTGAGAGTAGTGTTGTATCTGGGTTCGAACTAGCTACTGCGGCTGGACCCTTATGTGACGAACCTATGTGGGGTTTGGCATTTGTCATTGAGGCGCGGATATTTCCATTTACAGGGCAGTCTGATGAATCTGAAACACACCAACAATCGGAGCAGTATCGCATTTTGGCAGGGCAGGTAATTGCAACTGTCAAGGATGCCTGTAGAGCAGCTGTGCTTCAGAACAAGCCACGACTCGTGGAAGCAATGTACTTTTGTGAATTGAATACCCCTACTGAATATTTAGGTCCCATGTATGCTGTACTTTCCCGAAGACGAGCCAGAATTTTGAAGGAGGAGATGCAGGAAGGTTCTCCTTTCTTCACAGTTCATGCATATGTTCCTGTCTCTGAGAGCTTTGGTTTTGCGGATCAACTTAGGAGAGGGACTTCTGGTGCTGCAAGTGCACTTCTTGTATTTAGCCACTGGGAAGCACTTTCTGAGGATCCTTTCTTTGTACCTAAAACAGAAGAGGAAATTGAAGAGTTTGGAGATGGTTCTAGTGTTCTGCCAAATACAGCAAGAAAGTTAATTGATGCAGTTAGACGGCGCAAGGGACTTCCCGTGGAGGAGAAAGTAGTACAGCATGGAACCAAACAGAGGACACGAGCTCGTAAAGTTTGA 3114 0.4586 MNDDVSDTHKIRNMCILAHVDHGKTTLADHLIAAAGGALLHPKLAGRVRFMDYLDEEQRRAITMKSSSISLHYKDHSVNLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEGVHIQTHAVLRQCWIEKLSPCLVLNKIDRLITELKLTPSEAYTRLSRIVHEVNNIVSAYKSEKYLSDVDSIVAAAGASGNEDEEFVEDDNDDEEDTFQPQKGNVAFVCALDGWGFRVHEFAEFYASKLGASVNALQKALWGPRYFNPKTKMIVGKKGIAGVGGGKVAKPMFVQFVLEPLWQVYQGALEGKGLVEKVVKAFNLSIPARELQNKDPKVVLQAIMSRWLPLSDAVLSMVVKCMPDPIAAQSFRVSRLLPKREVVVNVSDGVEIEIDRSVVEAAEHVRKSVEVCDLRPDAPCVAFVSKMFAIPVKMLPPSENGYGDEGEGDSDECFLAFARVFSGVLNAGQRVFVLSALYDPLKGESMQKHVQEAELQSLYLMMGQGLKVVKSAKAGNIIAIQGLGQHILKSATLCSTRNCWPFSSLEFQVAPTLRVAIEPSDPADVGALLKGLRLLNRADPFVEVHVSARGEHVLAAAGEVHLERCIKDLKDRFAKINLEVSPPLVSYKESIEGEVSNMLENLKALRKSSDYVEKTTPNGRCVVRVRVMKLPLSLTKVLHESSDLLEDIIGLKSGQTVKSLEIQGMSILQKDNPTEVLKKRVIDAVESDIMSRIENDKDHTDKDHTDKCKLQWLKLLRRIWALGPRQIGPNILFTPDIKAAECGDGSVLIRGCSHIAERLGFTADSNSAHSVIETPSETSHALYMDVEYLESSVVSGFELATAAGPLCDEPMWGLAFVIEARIFPFTGQSDESETHQQSEQYRILAGQVIATVKDACRAAVLQNKPRLVEAMYFCELNTPTEYLGPMYAVLSRRRARILKEEMQEGSPFFTVHAYVPVSESFGFADQLRRGTSGAASALLVFSHWEALSEDPFFVPKTEEEIEEFGDGSSVLPNTARKLIDAVRRRKGLPVEEKVVQHGTKQRTRARKV 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1408 1037 Pfam Elongation factor Tu GTP binding domain 10 349 IPR000795 GO:0003924|GO:0005525
Lal4g1408 1037 PANTHER - 5 1036 - -
Lal4g1408 1037 Coils Coil 617 637 - -
Lal4g1408 1037 Pfam Elongation factor Tu domain 2 444 523 IPR004161 GO:0005525
Lal4g1408 1037 Pfam Elongation factor G C-terminus 896 980 IPR000640 -
Lal4g1408 1037 SUPERFAMILY Translation proteins 399 533 IPR009000 -
Lal4g1408 1037 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 352 IPR027417 -
Lal4g1408 1037 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 5 1036 - -
Lal4g1408 1037 Gene3D - 894 1028 - -
Lal4g1408 1037 Gene3D - 3 222 IPR027417 -
Lal4g1408 1037 CDD EF2 12 236 - -
Lal4g1408 1037 CDD EF2_II 408 525 - -
Lal4g1408 1037 SMART EFG_C_a 895 984 IPR000640 -
Lal4g1408 1037 Gene3D Yeast translation eEF2 (G' domain) 228 337 - -
Lal4g1408 1037 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 9 250 IPR000795 GO:0003924|GO:0005525
Lal4g1408 1037 CDD EF2_snRNP_III 540 611 - -
Lal4g1408 1037 CDD eEF2_snRNP_like_C 898 976 - -
Lal4g1408 1037 SUPERFAMILY Ribosomal protein S5 domain 2-like 614 897 IPR020568 -
Lal4g1408 1037 Gene3D - 635 892 IPR014721 -
Lal4g1408 1037 Gene3D Elongation Factor G (Translational Gtpase), domain 3 539 615 - -
Lal4g1408 1037 SUPERFAMILY EF-G C-terminal domain-like 898 996 IPR035647 -
Lal4g1408 1037 CDD aeEF2_snRNP_like_IV 611 902 - -
Lal4g1408 1037 PRINTS GTP-binding elongation factor signature 13 26 IPR000795 GO:0003924|GO:0005525
Lal4g1408 1037 PRINTS GTP-binding elongation factor signature 59 67 IPR000795 GO:0003924|GO:0005525
Lal4g1408 1037 PRINTS GTP-binding elongation factor signature 79 89 IPR000795 GO:0003924|GO:0005525
Lal4g1408 1037 PRINTS GTP-binding elongation factor signature 95 106 IPR000795 GO:0003924|GO:0005525
Lal4g1408 1037 PRINTS GTP-binding elongation factor signature 131 140 IPR000795 GO:0003924|GO:0005525
Lal4g1408 1037 SUPERFAMILY EF-G C-terminal domain-like 538 612 IPR035647 -
Lal4g1408 1037 Gene3D Translation factors 354 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1408 Lal-Chr4 18310713 18313826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1408 4 1037 Eukaryotic Initiation Factors Gene Family AT3G22980 69.885 0.0 1456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1408 K14536 - pvu:PHAVU_003G003900g 1618.21