Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1398 ATGGCTGAACAAACTGAGAAGGCATTTCTGAAGCAACCAAAAGTTTTCCTAAGCTCTCATAAATCTGGGAAGGGAAAGAGACCTGGGAAAGGTGGGAATCGTTTTTGGAAATCCATTGGACTTGGATTTAAGACTCCCAGGGATGCCATTGATGGAACATACATCGACAAGAAGTGCCCCTTTACTGGCAATGTTTCTATCCGAGGTCGTATAATAGCTGGTACTTGTCACAGTGCTAAAATGACAAGGACTATTATTGTAAGGAGGAATTATCTTCATTATATAAAGAAGTATCAGAGATATGAAAAGCGACATTCGAACATTCCTGCTCATGTGTCACCTTGCTTCCGTGTGAAGGAAGGGGATCATGTTATTATCGGCCAATGCAGACCAATCTCAAAGACAGTGAGGTTCAATGTATTGAAAGTGATCCCAGCTGGATCCTCCACCGGTGCGAAGAAGGCATTCGCCGGACTTTGA 480 0.4313 MAEQTEKAFLKQPKVFLSSHKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIDGTYIDKKCPFTGNVSIRGRIIAGTCHSAKMTRTIIVRRNYLHYIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPISKTVRFNVLKVIPAGSSTGAKKAFAGL 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1398 159 ProSitePatterns Ribosomal protein S17 signature. 121 133 IPR019979 GO:0003735|GO:0005840|GO:0006412
Lal4g1398 159 Pfam Ribosomal protein S17 74 142 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lal4g1398 159 PRINTS Ribosomal protein S17 family signature 88 111 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lal4g1398 159 PRINTS Ribosomal protein S17 family signature 121 131 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lal4g1398 159 PRINTS Ribosomal protein S17 family signature 131 138 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lal4g1398 159 Gene3D - 1 158 - -
Lal4g1398 159 Pfam Ribosomal_S17 N-terminal 4 72 IPR032440 -
Lal4g1398 159 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 1 159 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lal4g1398 159 SUPERFAMILY Nucleic acid-binding proteins 68 147 IPR012340 -
Lal4g1398 159 PANTHER 40S RIBOSOMAL PROTEIN S11-1-RELATED 1 159 - -
Lal4g1398 159 TIGRFAM uS17_arch: ribosomal protein uS17 55 143 IPR028333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1398 Lal-Chr4 18208270 18210884 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1398 1 159 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 88.679 2.14e-96 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1398 K02949 - gmx:100500186 303.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1398 4 18208270 18210884 Lal4g1398 4 18208270 18210884 ECH