Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1390 ATGAGCTCTTCTTTCTGTTTATCTGAAAGCATCCATGAATCCCATTGTTCCTCATTTCCTTCTTCATTGAAACTGAAAATAAGCTTATTTTACCAAACACACACAAATGAGAATATGATGGGAGAAGCCCTAGAAGCTAAACAAAGATTGGATGAAAAGTTTAGACTACTATGGGAATCAAAAAACATAAGGGAAAATATGAAGTGTGTGGAACGGAGAAAGACAAGCCCAGCAAAGATGCACATTTATGGATCAATGAAAAGTGGTTTAAGGAAGTTCATTTGGACAAAATTATTGTGCTGCTGGAATGTCCCAGAACTAGAGGATTGTGCTGTGTGCTTGGAGCCACTCGAGGATAGTGAGTCACTGATTCATCTCCCTTGTAAACATAGGTTCCATTCTAGTTGCTTGAAACCATGGTTAGATAAAAAGTCTCATTGTCCATGTTGCAGAGCTACTATTATTTTCACCTAG 474 0.3797 MSSSFCLSESIHESHCSSFPSSLKLKISLFYQTHTNENMMGEALEAKQRLDEKFRLLWESKNIRENMKCVERRKTSPAKMHIYGSMKSGLRKFIWTKLLCCWNVPELEDCAVCLEPLEDSESLIHLPCKHRFHSSCLKPWLDKKSHCPCCRATIIFT 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1390 157 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 155 IPR013083 -
Lal4g1390 157 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 13 152 - -
Lal4g1390 157 ProSiteProfiles Zinc finger RING-type profile. 110 151 IPR001841 -
Lal4g1390 157 SMART ring_2 110 150 IPR001841 -
Lal4g1390 157 CDD RING-H2_PA-TM-RING 109 151 - -
Lal4g1390 157 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 13 152 - -
Lal4g1390 157 Pfam Ring finger domain 109 151 IPR001841 -
Lal4g1390 157 SUPERFAMILY RING/U-box 99 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1390 Lal-Chr4 18169579 18170896 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1390 106 154 C3H Transcription Factor Family AT1G49850 55.102 1.60e-13 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1390 - - gmx:100527583 167.162
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1390 4 18169579 18170896 Lal4g1390 4 18169579 18170896 ECH