Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1389 ATGGCTGCAATGATAGCAGGAGTTCAATATGCTAGAAGGAGAAAGTTACATCATGCAAAGAACCATGAATTCCTTCGTTCCTCACCTTCTTCATCACGGATATACTCAGATGAGAATATGGAAGGAACAGCCAGAGAAGCTAAACAAAGATTGGATGAAAAATTTAGAGCACAAAGGGAAATGGAAAACAAAAGGGAAAACACAAAGTTTATGGAGGGAAGAAAGAGAAGTGGTTTAAGGAAGTTCAGTTGGACAAAATTGAGGTGGAAGCCCTCAGAAGTAGAGGATTGTGCTGTGTGCTTGGAATCACTCAAAGATGGAGAGAGACTGGTCCATCTTCCTTGTGAGCATAGGTTCCATTTTAGTTGCTTGAAGCCATGGTTAGATAAAAATTCTCAATGCCCATGTTGCAGAGCTACCATTAAAATCTGA 432 0.4028 MAAMIAGVQYARRRKLHHAKNHEFLRSSPSSSRIYSDENMEGTAREAKQRLDEKFRAQREMENKRENTKFMEGRKRSGLRKFSWTKLRWKPSEVEDCAVCLESLKDGERLVHLPCEHRFHFSCLKPWLDKNSQCPCCRATIKI 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1389 143 Pfam Ring finger domain 96 138 IPR001841 -
Lal4g1389 143 ProSiteProfiles Zinc finger RING-type profile. 97 138 IPR001841 -
Lal4g1389 143 SMART ring_2 97 137 IPR001841 -
Lal4g1389 143 PANTHER OS02G0798200 PROTEIN 2 140 - -
Lal4g1389 143 CDD RING-H2_PA-TM-RING 96 138 - -
Lal4g1389 143 MobiDBLite consensus disorder prediction 27 47 - -
Lal4g1389 143 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 142 IPR013083 -
Lal4g1389 143 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 2 140 - -
Lal4g1389 143 SUPERFAMILY RING/U-box 96 141 - -
Lal4g1389 143 Coils Coil 44 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1389 Lal-Chr4 18154990 18156146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1389 92 141 C3H Transcription Factor Family AT1G49850 56.000 8.64e-16 69.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1380 17 15214155 15215475 Lal4g1389 4 18154990 18156146 LSH
Lal21g1138 21 13959741 13961310 Lal4g1389 4 18154990 18156146 LSH