Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1386 ATGGAGGGAAAGACAAAAGCTAGAAAGAAAACTAGGGTTTTAGAAATGGGACGTGGAAAGATTGAGATCAAGAGGATCCAGAACACCACAACAAGGCAAGTCACGTTCTCAAAACGAAGAAGTGGCCTTCTGAAAAAGACTCATGAACTTTCCATTCTCTGTGATGCTCAAATCGGTCTCATCATTTTCTCTAGTACTGGGAAAATGTATCAGTATTGCACTGAACCCTTCAGGATGGAACATATCATTGAAAAGTACCAAAGAGCAACAGGAACTCCCATAATGGAACAAGATCACTTCCGGGAGAATATATTGAATGAAATGGCAAATTTGAGGCAAGAAACTATTCGTCTTGAAATGGGAATTCAACGATATCTTGGAGAGGATATAAGTTGTTTACAATATGAGGATTTGACTAAACTTGAAGAAGAATTAGAGAAATCTGTGGCAAAGGTTCGAGACCGTCAGAATGAGCTCGTGCAACAGCAAATGGATAATCTTCAGAGAAAGATTCAAGAGCAGAGGGCAATGATGGAATTTCAGCAGGCTGCAGTGGAAGCAAATAAACCAGTGCAGCATCAGCAGCAACAAATAATGGATTATTTCTCATTCTTTGAAGAAGACCAACCTGCTAGTACTTTGCTTCAACTTGCTGCCCCTGTTCTTCCACATCTTCAGCTGGCACAGCCTAATATTCAAGACTCTCCATAG 711 0.4051 MEGKTKARKKTRVLEMGRGKIEIKRIQNTTTRQVTFSKRRSGLLKKTHELSILCDAQIGLIIFSSTGKMYQYCTEPFRMEHIIEKYQRATGTPIMEQDHFRENILNEMANLRQETIRLEMGIQRYLGEDISCLQYEDLTKLEEELEKSVAKVRDRQNELVQQQMDNLQRKIQEQRAMMEFQQAAVEANKPVQHQQQQIMDYFSFFEEDQPASTLLQLAAPVLPHLQLAQPNIQDSP 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1386 236 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Lal4g1386 236 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Lal4g1386 236 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Lal4g1386 236 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Lal4g1386 236 PANTHER MADS BOX PROTEIN 16 218 - -
Lal4g1386 236 CDD MADS_MEF2_like 17 91 IPR033896 GO:0000977|GO:0045944
Lal4g1386 236 Gene3D - 29 113 IPR036879 GO:0003677|GO:0046983
Lal4g1386 236 SUPERFAMILY SRF-like 17 97 IPR036879 GO:0003677|GO:0046983
Lal4g1386 236 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Lal4g1386 236 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Lal4g1386 236 ProSiteProfiles K-box domain profile. 101 188 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal4g1386 236 Coils Coil 135 184 - -
Lal4g1386 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Lal4g1386 236 Pfam K-box region 98 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal4g1386 236 PANTHER MADS-BOX TRANSCRIPTION FACTOR 16 218 IPR031050 GO:0005634|GO:0048316
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1386 Lal-Chr4 18107441 18112777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1386 2 236 MADS-box Gene Family AT5G23260 45.455 4.36e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal4g1386 K-box 3.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1386 - - gmx:100783876 279.256