Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1379 ATGGCTTTTCATCACAACGACCACGCACCTCACGAGATCAATTTCCAGTCTTATGCGGACGAGCAACGACAACTAACTCAAAACCGCGACATGCAGAGGCTACTACCATTCTCCGCCGGAGTCAGCGGCGGAGAACCACCGACGTGGCTGAACAACGCGGCGTCCAATCGTCAACAGAATTTCCTTCACTTACAACCGGACTCATCGGCGCAAAACGATGATGTTCGTGGAATGATCGGAAAAAACATGGATCGGAACCACCGTACGGAGAGTAATAATATGATGGAATCGGAGGAATTAATGGAATACAAAGCAGACATTCTGAGACACCCGCTTTATGAACAGATGTTGTCGGAACATGTTTCGTGTTTGAGGATTGCTACACCGGTGGATCAACTTCCTAGGATTGATGCTCAGCTTCAACAATCACAGCGCGTGGTGGAGAAATACTCTGGACTTGGAAATGGTGTGGTGGATGAGAAGGAGCTTGATCAATTCATGACTCATTATGTTCTATTGCTATGCACTTTTAAAGAACAATTGCAACAACATGTGCGTGTTCATGCTATGGAAGCAGTTATGGCTTGTTGGGAGTTAGAGCAATCTCTTCAAAGCTTGACCGGTGTATCTCCTGGTGAAGGAACAGGTGCAACAATGTCTGAGGATGAAGATGACCAAACAGAGAGCAATGGAAACTTATATGAAGGAAGCATGGAAGGTTCTGATAGTCTCACTTTTGGCCCTCTTGTTCCCACTGAAAATGAAAGATCTTTGATGGAGCGTGTGAGGCAAGAGTTGAAGCATGAGCTCAAAATGGGTTACAAGGACAAAATTGTGGACATAAGGGAAGAAATTCTAAGAAAGAGAAGAGCTGGGAAGCTACCAGGGGATACAACCTCCCTTTTAAAAGCTTGGTGGCAATCACATTCTAAATGGCCCTATCCAACCGAAGAAGACAAGGCTAGGTTGGTGCAGGAAACAGGGTTGCAATTAAAGCAAATAAATAATTGGTTCATAAATCAAAGGAAAAGGAATTGGAATACTAATCCTTCATCTTCTAGTGGTTCCAAAACCAAGCGCAAGAGTGGTGCAGGTGAAACGAGTAATGAGAGCTTTATGTGA 1122 0.4447 MAFHHNDHAPHEINFQSYADEQRQLTQNRDMQRLLPFSAGVSGGEPPTWLNNAASNRQQNFLHLQPDSSAQNDDVRGMIGKNMDRNHRTESNNMMESEELMEYKADILRHPLYEQMLSEHVSCLRIATPVDQLPRIDAQLQQSQRVVEKYSGLGNGVVDEKELDQFMTHYVLLLCTFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSEDEDDQTESNGNLYEGSMEGSDSLTFGPLVPTENERSLMERVRQELKHELKMGYKDKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWNTNPSSSSGSKTKRKSGAGETSNESFM 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1379 373 SMART KNOX1_2 101 145 IPR005540 GO:0003677|GO:0005634
Lal4g1379 373 SMART ELK_2 265 286 IPR005539 GO:0003677
Lal4g1379 373 MobiDBLite consensus disorder prediction 207 231 - -
Lal4g1379 373 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 32 366 - -
Lal4g1379 373 ProSiteProfiles 'Homeobox' domain profile. 285 348 IPR001356 GO:0003677
Lal4g1379 373 Gene3D - 287 363 - -
Lal4g1379 373 SUPERFAMILY Homeodomain-like 287 351 IPR009057 -
Lal4g1379 373 SMART KNOX2_2 152 208 IPR005541 GO:0003677|GO:0005634
Lal4g1379 373 MobiDBLite consensus disorder prediction 342 373 - -
Lal4g1379 373 SMART HOX_1 287 352 IPR001356 GO:0003677
Lal4g1379 373 ProSiteProfiles ELK domain profile. 265 285 IPR005539 GO:0003677
Lal4g1379 373 Pfam Homeobox KN domain 305 344 IPR008422 GO:0003677|GO:0006355
Lal4g1379 373 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 32 366 - -
Lal4g1379 373 Pfam KNOX2 domain 158 207 IPR005541 GO:0003677|GO:0005634
Lal4g1379 373 CDD homeodomain 288 349 IPR001356 GO:0003677
Lal4g1379 373 Pfam KNOX1 domain 103 144 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1379 Lal-Chr4 18045188 18055006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1379 103 368 Homeobox Transcription Factor Family AT5G11060 81.852 3.72e-162 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lal4g1379 KNOX2 2.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1379 - - gmx:100816347 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1379 4 18045188 18055006 Lal4g1379 4 18045188 18055006 ECH
Lal14g1792 14 17678749 17690016 Lal4g1379 4 18045188 18055006 PCT
Lal4g1379 4 18045188 18055006 Lal14g1792 14 17678749 17690016 PCT