Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal4g1371 | ATGCCTTCTCACAAAACCTTCAGGATCAAGAAGAAACTTGGAAAGAAGATGAGGCAGAATAGGCCAATTCCTTATTGGATCCGAATGAGGACAGACAATACTATCAGGTACAATGCTAAACATTCGTCTTTAGAGTTTGTATTAGCTTACTTTTACATTCAAAATAGCTTATTATCAGAAGGTCGGGGTTGGGTTTGTGCTTACCTTACCCCAAAATCCAAAACCTGA | 228 | 0.386 | MPSHKTFRIKKKLGKKMRQNRPIPYWIRMRTDNTIRYNAKHSSLEFVLAYFYIQNSLLSEGRGWVCAYLTPKSKT | 75 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal4g1371 | 75 | Gene3D | Ribosomal protein L39e | 1 | 44 | IPR023626 | - | |
| Lal4g1371 | 75 | SUPERFAMILY | Ribosomal protein L39e | 3 | 41 | IPR023626 | - | |
| Lal4g1371 | 75 | Pfam | Ribosomal L39 protein | 9 | 40 | IPR000077 | GO:0003735|GO:0005840|GO:0006412 | |
| Lal4g1371 | 75 | PANTHER | 60S RIBOSOMAL PROTEIN L39-2 | 1 | 41 | - | - | |
| Lal4g1371 | 75 | PANTHER | RIBOSOMAL PROTEIN L39E | 1 | 41 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal4g1371 | Lal-Chr4 | 17968096 | 17969767 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lal4g1371 | 1 | 40 | Cytoplasmic Ribosomal Protein Gene Family | AT4G31985 | 90.000 | 9.54e-22 | 77.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal4g1371 | K02924 | - | gmx:100779071 | 86.2705 |