Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1370 ATGGAGAATCATAAGGGTCATGTGATGGATGAAGAAGGGGCCAGTGACCCTTTTCCTGTGGGTATGCGTGTTCTTGCTGTTGATGATGACCCAACTTGCCTCAGAGTTTTGGAGACCCTGCTACGCAAATGCCACTATCATGTTACTACAACTAATCAAGCAATTGAGGCTCTGAGAATGTTGAGGGAATATAGAAATAACTTTGACCTTGTCATTAGTGATGTGAATATGCCAGACATTGATGGATTTAAGCTTCTTGAATTGGTGGGGCTTGAAATGGACCTACCTGTCATCATGTTGTCATCACATAGTGATACAAAGCTGGTGATGAAGGGTGTTGCACACGGTGCGTGCGACTATTTGCTGAAACCGGTTCGAATCGAGGAGCTCAAGAACATATGGCAACATGTAGTGCGAAGAAAAAAATTTGATGGCGGGGATAAGACTTCCAAGGAGGAGAGGGCTCCTAATATTGCTGGGGAAGGTAGTCAAGGAATCGTATCAGAAAGCAGTGCAGATCAGAATAAAGCTCTCGGTAAGAGAAGGAAGGAGCAAAGTGAGGATGAAGAAGAAGATCTTGAAGGGGATGGAGAAGAGATCGATGATCCCTCAGCGCAGAAGAAGCCTCGTGTAGTTTGGTCAGTTGAGCTGCATCGAAAATTTGTTGCTGCAGTTAATCAGCTGGGCCTTGAAAAGGCTGTTCCAAAGAAAATACTTGACCTTATGAATGTTGAATGGCTTACACGGGAAAACGTGGCAAGTCATCTGCAGAAATATAGACTCTATCTGAAAAAGGCAACCCAGCAAGCTAGTATGGTTGCTGCATTCGGCAGTAGTGATTCTTACTTGCGGATGGGTTCAATAGATGAATTTGAAGATTTTTGCGCCTCGTCTGGATCAGGAAGGATCTCAACCACGACATTACCATCATATGCATCAAGTGGAATTTTCGGTAGGCTGAATTCCCCAGCTTGCTTGAACATGAGAGGAATTAGTTCTTCTGCTTTAATCCGGTCTGTTCAGCCTCAAAATGTTAACAGCGCGTTAAGCACAGTTGGAAACATTCAGCCATCCATGTATCCCTCAAATCAAAGCTCGGGTTTATTGCATGGCATTCCGACATCAATCGAGCTTACACCATCTAAACAAAGCAACTGTACAACGGGTATAACACAGTTAGGTCAAGTTGATCCGAGTGGATTTACTGTCACTTCTGGCTTCCCGGAAAGTAGTAGGGTTATTGTCGGTAGTGCAGACAATTCTCTACTTAGTATCTCGAATAATCATTTGATATTACAAGGAAACTCACAGCAAACCCATTCCGGAGCATTTAGAAGCCAGTCTTCTGATAGAGAAGCTCCTTTGAGCACCGAATCTTTTGATATCGGGTTATGTGGTTCTTCTAATTTGCTGGGTTATAACCGGTGTAATGAAAACTGGCAGAGTGCAGCTCAGTTGTCTAAATTTCCTGCCAATTCTTCGCCGTTGTGTGAGGCTTTCAATAACGACGAACTGCATCCCGCTGGCGTAAATGTTTCCAACTCGAATACTCCTATGGGTAACAGTTCGGTTGATTTCTCATCCAGAATGGCGAATTCTGTTCCATTAGAGGATTCTAGAAATGAGCTGCAATGTCAAGAAGGCTTTATTGGGAATATTCTACAGCCTTCATTAAGTTTCACACCACGACAAAGATGGGAAGAACATAGACTGGACTACAACCAAAACACGAGTCGTCCCTTCGATTCTGCAAATTCACAAATTTCTCATATTGGAGTGACGAACTCGATGGGGCATAATTTAAACCAAAATAATTCATTTTGCAGCAATAGAATTGACACATCTTTGTTTGGCCAACTAAATGGGGCTTCCTCGACTACGTACCGGTGCAATGAAGTCGAGAAACTTTCTTCGGAAATAAGATTCAAGTCAAACGATGCCTACATTTTGGAGCAAATGAGGTCCCAAGATGGATTTATTCAGAATAATTATGGGACCTTGGATGAGATAATGGGTGCAATGGTCAAAAGGCTTGTGATTAGGGATGACAATGAAAACCGAACCCGCGATTATCCGTCCGAACCCAACCCGAATTTAACGGGGAAAACCCAATGTGATAGGACGAGTTTTCATCGGGTTCAGGTTACACGAAACTCGACGGGTTTGGGGATAGTATCTTTGTTTTCAATCCCACTTAATTCGGGTTCGGGCCTTGAATTTTGGGCTTGGGGTTGGGCATGCACAAACCAGACTTCGACTCGCCTGGAAAAGAGTGTTTCTAATGCAGGAACAGCATGA 2298 0.4352 MENHKGHVMDEEGASDPFPVGMRVLAVDDDPTCLRVLETLLRKCHYHVTTTNQAIEALRMLREYRNNFDLVISDVNMPDIDGFKLLELVGLEMDLPVIMLSSHSDTKLVMKGVAHGACDYLLKPVRIEELKNIWQHVVRRKKFDGGDKTSKEERAPNIAGEGSQGIVSESSADQNKALGKRRKEQSEDEEEDLEGDGEEIDDPSAQKKPRVVWSVELHRKFVAAVNQLGLEKAVPKKILDLMNVEWLTRENVASHLQKYRLYLKKATQQASMVAAFGSSDSYLRMGSIDEFEDFCASSGSGRISTTTLPSYASSGIFGRLNSPACLNMRGISSSALIRSVQPQNVNSALSTVGNIQPSMYPSNQSSGLLHGIPTSIELTPSKQSNCTTGITQLGQVDPSGFTVTSGFPESSRVIVGSADNSLLSISNNHLILQGNSQQTHSGAFRSQSSDREAPLSTESFDIGLCGSSNLLGYNRCNENWQSAAQLSKFPANSSPLCEAFNNDELHPAGVNVSNSNTPMGNSSVDFSSRMANSVPLEDSRNELQCQEGFIGNILQPSLSFTPRQRWEEHRLDYNQNTSRPFDSANSQISHIGVTNSMGHNLNQNNSFCSNRIDTSLFGQLNGASSTTYRCNEVEKLSSEIRFKSNDAYILEQMRSQDGFIQNNYGTLDEIMGAMVKRLVIRDDNENRTRDYPSEPNPNLTGKTQCDRTSFHRVQVTRNSTGLGIVSLFSIPLNSGSGLEFWAWGWACTNQTSTRLEKSVSNAGTA 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1370 765 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 264 IPR017930 -
Lal4g1370 765 ProSiteProfiles Response regulatory domain profile. 23 138 IPR001789 GO:0000160
Lal4g1370 765 SUPERFAMILY CheY-like 21 142 IPR011006 -
Lal4g1370 765 SMART REC_2 22 134 IPR001789 GO:0000160
Lal4g1370 765 CDD REC_typeB_ARR-like 24 138 - -
Lal4g1370 765 Gene3D - 21 155 - -
Lal4g1370 765 Gene3D - 204 266 - -
Lal4g1370 765 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 681 - -
Lal4g1370 765 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 208 261 IPR006447 GO:0003677
Lal4g1370 765 SUPERFAMILY Homeodomain-like 206 265 IPR009057 -
Lal4g1370 765 Pfam Response regulator receiver domain 24 132 IPR001789 GO:0000160
Lal4g1370 765 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 681 IPR045279 GO:0009736
Lal4g1370 765 MobiDBLite consensus disorder prediction 145 205 - -
Lal4g1370 765 Pfam Myb-like DNA-binding domain 210 260 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1370 Lal-Chr4 17947368 17951792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1370 14 442 Response Regulator Gene Family AT2G25180 50.801 4.96e-120 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lal4g1370 Response_reg 6.3e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1370 K14491 - gmx:100776075 981.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1370 4 17947368 17951792 Lal4g1370 4 17947368 17951792 ECH