Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1367 TTAGAGCTCAACTTCTTCCCGGTTGTCATGGGTCAAAATATGATATCAGAGTTAGAGCTCAACTTCTTCCCGGTTGTCACGGGTCAAAATATGCCATTTTTTCGCCTGGTCCGACAGACTTATGTGGAGGGGACAAGTACAAAATTTAAGGTTGAAATTGTGAAGGAGTTGTTAATGGCATCAACATCTTGTGTTAGCCATATCCCATTAATCCCCATGAAAGAGTATCCTCCACCTCTTGCAAAATATGAAGAGGTTACAACAAATCCTAAGCTTTTCATGCTTACCTTGGAGAAGCTCCATGCTTCTATGGGTACCAAGTTTATGATTCCCATTATTGGGGGCAAAGAACTAGATTTGTGTCGCCTCTTTCTTGAAGTCACTTCTCGTGGAGGGATTGAGAAGATAATTAAAGAAAGAAGATGGAAAGAAGTTACTTCAGTTTTTAATTTTCCATCAACAGCTACAAATGCTTCCTTTGTTCTTAGGAAATACTATTCTTCATTGCTTTATCACTATGAACAAATCTACTATTTCAAAGCCAATCAATGTAACCATGCAATTTCTGGTTCTCTTCAAAATCAATCAACCATATCGTTTCCTAATCAATGGACACAATTTTCGCAGACTGCGCCCGAAATTCAATCGGCTATCTTTCAACAATCAAGAGTTAATCTTACTGAATTGTCTGAAGGATCTCAAGTCATTGGACTTATTGATGGGAAATTTGAAAGTGGTTATCTAGTTACTGTTTCAATGGGTTTTGAGACACTTAATGGTGTACTTTATGATGTTCCACAAATCCCTGTAATGCCATCATCACATTATCACAATGTTATGGCTACTAAGAACAAAGTTGCTTCTGCTTCATTGGGTGTCCATCGTCGCCGACGAAGGAAGAAATCGGAGATAAAAAGAAGAGATCCTTCCCATCCAAAACCCAACCGAAGCGGCTATAATTTCTTCTTTGCTGAGCAGCATGCAAGACTAAAACCACTACACCAAGCAAAGGACAGAGAGATTAGTAGGATCATTGGTGAACTATGGAACAAGTTAAAAGAGCCTGAAAAACAAGTTTATCAAGAGAAGGCTATTAAGGATAAAGAGAGGTACAAAGCAGAAATGGAAGAATATTGTCTTAAACTGAAGACATGCAATTCTAACAATGATGCTATGCAACTACAACAAAGGATTCCTGAACTAGATAAAGTTTTGGATCAAAATGATACAGGTTCTCAAACTCCTGAGGATGAAAGTGGTTCTAGTGGAAGTGATTATGAATATGATAAAGGTATAGAAAATGATACTAATGTGATGGATGGTTCTTATGGAACAAGTGTGTGTGGTGAAGCTATTACTTTGGGTTTAGGTAAGTCATCAAAGGAGGATAGTTATGAGTCTTTTCACCATTGTGAGGAAGAAGTGGAAGCTGGACATAAACAGGTTCAAAAGATGGGTGAGAACCAAAATATGCTGTCATTGCTTTAG 1488 0.3797 LELNFFPVVMGQNMISELELNFFPVVTGQNMPFFRLVRQTYVEGTSTKFKVEIVKELLMASTSCVSHIPLIPMKEYPPPLAKYEEVTTNPKLFMLTLEKLHASMGTKFMIPIIGGKELDLCRLFLEVTSRGGIEKIIKERRWKEVTSVFNFPSTATNASFVLRKYYSSLLYHYEQIYYFKANQCNHAISGSLQNQSTISFPNQWTQFSQTAPEIQSAIFQQSRVNLTELSEGSQVIGLIDGKFESGYLVTVSMGFETLNGVLYDVPQIPVMPSSHYHNVMATKNKVASASLGVHRRRRRKKSEIKRRDPSHPKPNRSGYNFFFAEQHARLKPLHQAKDREISRIIGELWNKLKEPEKQVYQEKAIKDKERYKAEMEEYCLKLKTCNSNNDAMQLQQRIPELDKVLDQNDTGSQTPEDESGSSGSDYEYDKGIENDTNVMDGSYGTSVCGEAITLGLGKSSKEDSYESFHHCEEEVEAGHKQVQKMGENQNMLSLL 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1367 495 SMART ARID_2 84 174 - -
Lal4g1367 495 SUPERFAMILY ARID-like 84 183 IPR036431 GO:0003677
Lal4g1367 495 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 71 434 - -
Lal4g1367 495 MobiDBLite consensus disorder prediction 287 319 - -
Lal4g1367 495 Pfam ARID/BRIGHT DNA binding domain 91 174 IPR001606 GO:0003677
Lal4g1367 495 SUPERFAMILY HMG-box 300 383 IPR036910 -
Lal4g1367 495 ProSiteProfiles ARID domain profile. 87 178 IPR001606 GO:0003677
Lal4g1367 495 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 71 434 - -
Lal4g1367 495 MobiDBLite consensus disorder prediction 290 306 - -
Lal4g1367 495 MobiDBLite consensus disorder prediction 406 421 - -
Lal4g1367 495 Gene3D High mobility group box domain 296 397 IPR036910 -
Lal4g1367 495 Pfam HMG (high mobility group) box 312 378 IPR009071 -
Lal4g1367 495 CDD ARID_HMGB9-like 89 174 IPR045303 GO:0003677
Lal4g1367 495 SMART hmgende2 311 380 IPR009071 -
Lal4g1367 495 CDD HMGB-UBF_HMG-box 312 376 - -
Lal4g1367 495 SMART bright_3 88 179 IPR001606 GO:0003677
Lal4g1367 495 Gene3D - 79 196 IPR036431 GO:0003677
Lal4g1367 495 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 312 379 IPR009071 -
Lal4g1367 495 MobiDBLite consensus disorder prediction 406 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1367 Lal-Chr4 17910761 17915415 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1367 59 409 ARID Transcription Factor Family AT1G04880 54.201 1.75e-110 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lal4g1367 ARID 1.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1367 - - mtr:MTR_7g005970 486.493