Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1347 ATGGAAGCCAGTGCTGGACTAGTTGCTGGTTCTCACAACCGCAATGAGCTTGTGGTTATTCATGGCCATGAAGAGCACAAGCCATTGAAGAACTTGGATGGTCAAGTGTGTGAGATATGTGGGGATGGGGTGGGAGTAACGGTGGATGGAGACTTGTTTGTGGCCTGTAATGAGTGTGGTTTTCCGGTATGCCGGCCGTGCTATGAATATGAAAGGAGAGAGGGGACCCAGCTTTGCCCACAGTGCAAGACTAGATATAAGCGTCTCAAAGGGAGCCCACGAGTTCAAGGAGATGAAGATGAAGAGGGTGTCGATGATATCGAGCATGAGTTTAATATTGAGGACCAAAACAACAACCATGGTTATGTTGTAGAAGCCATGCTGCATGGAAAGATGAGTTATGGAAGAGGTCCTGAAGAAGATGAGCATTCTCAATTCCCACCTGTTATATCTAGCAGTCGTTCTAGGCCTGTAAGTGGAGAGTTATCAGTAGCATCTCATGGTTATGGGGACCAGATGTTAGCTTCTTCGTTGCATAAACGAGTGCATCCATATCCAATGTCTGAACCAGGAAGTGCAAGATGGGATGAAAAGAAAGAGGATGGATGGAAGGACAGAATGGATGACTGGAAATTGCAGCAAGGCAATTTAGGACCCGAACCTGAAGAAGATCCAGATTCATCTATGTTAGATGAAGCAAGGCAGCCACTGTCCAGGAAAATTCCAATAGCATCTAGCAAAGTCAATCCATATAGGATGGTGATTGTGGCGCGGCTCGTGATTCTTGCTTTCTTCTTTCGATATAGAATTTTGAACCCGGTACAGGATGCAATTGGGCTATGGCTAACCTCTATTGTATGTGAAATCTGGTTTGCCTTTTCATGGATTCTTGATCAGTTTCCTAAATGGTTTCCCATCGAACGAGAGACCTACCTTGACCGTCTTTCCATCAGGTATGAGCGTGAAGATGAACCGAATATGCTTGCTCCTGTGGATGTCTTTGTTAGTACAGTGGATCCAATGAAGGAACCTCCTTTGGTTACAGCAAACACTGTTCTTTCAATCTTGGCCATGGATTACCCAGTTGAAAAGATATCATGCTATATTTCTGATGATGGAGCTTCAATGTGCACATTTGAATCCTTATCAGAAACTGCAGAGTTTGCTAGAAAATGGGTACCATTTTGTAAGAAATTTTCTATAGAGCCTAGAGCACCTGATATGTACTTCTCTGAGAAGATTGACTACCTAAAGGACAAGGTGCAACCCACCTTCGTTAAGGAGCGCCGAGCTATGAAGAGAGAATATGAAGAGTTTAAGGTTAGAATCAATGCACTTGTTGCAAAGGCGCAAAAGGTTCCTGAAGGAGGGTGGATCATGCAAGATGGAACACCATGGCCAGGGAACAACACCAAGGATCATCCTGGAATGATTCAAGTCTTTCTTGGCACCAGTGGAGGTCTTGATACTGAAGGAAACCAGCTTCCTCGCCTTGTCTATGTTTCACGAGAGAAAAGGCCTGGTTTTCAACACCACAAGAAAGCTGGTGCAATGAATGCTCTGGTTCGCGTGTCTGCAGTTCTCACAAATGCTCCTTTCATGTTGAACTTGGATTGCGATCATTATGTCAATAACAGCAAGGCTGCCCGGGAGGCCATGTGCTTCTTGATGGACCCGCAAACTGGGAAGAAGGTCTGCTATGTCCAGTTTCCTCAAAGATTCGATGGCATCGATACACATGATCGTTATGCCAACAGGAACACAGTTTTCTTTGATATTAACATGAAAGGTCTAGATGGTATTCAGGGTCCAGTATATGTTGGCACAGGTTGTTGTTTCAGGAGGCAAGCTTTATATGGATATAATCCTCCCAAGGGTCCCAAGCGTCCAAAAATGGTAAGCTGCGACTGTTGCCCATGTTTTGGAAGCCGCAAGAAGCTTAAGCATGCAAAGAGTGACACAAATGGAGAGGCTGCAAACCTACAAGGAATGGATGATGACAAAGAGATGTTGATGTCTCATATGAATTTTGAGAAGAAATTTGGACAATCATCGATCTTTGTGACTTCAACCTTGATGGAAGAGGGTGGTGTACCTCCTTCCTCAAGTCCAGCAAGCCTGCTTAAAGAAGCCATTCATGTAATCAGTTGTGGGTATGAAGACAAAACTGAATGGGGACTAGAGCTTGGTTGGATCTATGGATCTATCACAGAGGATATTCTAACAGGTTTTAAGATGCACTGCCGCGGTTGGAGATCCATTTACTGTAATCCAAGGAGAGCTGCATTCAAGGGAACTGCTCCTATCAACCTGTCCGATCGACTCAATCAGGTTCTTCGATGGGCACTTGGTTCCATTGAGATTTTCTTCAGTCACCATAGCCCTCTATGGTATGGATACAAGGAAGGGAAACTAAAGTGGCTTGAGAGATTTGCATATGCAAACACAACTGTCTACCCCTTCACCTCCATAGCTCTAGTTGCCTATTGTATTCTTCCTGCAGTTTGCTTGCTTACTGACAAATTCATCATGCCACCGATAAGCACTTTTGCTGGTTTGTACTTCATTGGTCTCTTCTCTTCGATCATCGCAACGGGCATTCTCGAGTTGAAATGGAGTGGAGTAAGCATTGAAGAATGGTGGAGAAATGAACAATTTTGGGTAATTGGTGGTGTATCAGCACATCTATTTGCTGTTATACAAGGTCTTCTAAAAGTTCTAGCTGGAATTGACACTAACTTCACAGTTACATCAAAAGCAACAGATGATGAAGACTTTGGAGAATTATATGCATTTAAATGGACCACTCTACTAATTCCACCAACAACAATCTTAATAATCAACATTGTTGGTGTTGTTGCTGGAATTTCTGATGCTATAAACAATGGTTATCAATCATGGGGTCCTTTATTTGGAAAACTTTTCTTTTCATTTTGGGTCATTGTTCATCTTTATCCATTCCTTAAAGGTTTGATGGGTAGGCAAAATCGCACGCCAACTATTGTAGTGATTTGGTCAGTGTTATTGGCTTCAATTTTTTCATTGCTTTGGGTAAGAATTGATCCATTTGTGATGAAAACTAAGGGACCTGATACAAAGCTATGTGGTATTAATTGCTGA 3120 0.4301 MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDGVGVTVDGDLFVACNECGFPVCRPCYEYERREGTQLCPQCKTRYKRLKGSPRVQGDEDEEGVDDIEHEFNIEDQNNNHGYVVEAMLHGKMSYGRGPEEDEHSQFPPVISSSRSRPVSGELSVASHGYGDQMLASSLHKRVHPYPMSEPGSARWDEKKEDGWKDRMDDWKLQQGNLGPEPEEDPDSSMLDEARQPLSRKIPIASSKVNPYRMVIVARLVILAFFFRYRILNPVQDAIGLWLTSIVCEIWFAFSWILDQFPKWFPIERETYLDRLSIRYEREDEPNMLAPVDVFVSTVDPMKEPPLVTANTVLSILAMDYPVEKISCYISDDGASMCTFESLSETAEFARKWVPFCKKFSIEPRAPDMYFSEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKVPEGGWIMQDGTPWPGNNTKDHPGMIQVFLGTSGGLDTEGNQLPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYVNNSKAAREAMCFLMDPQTGKKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCCFRRQALYGYNPPKGPKRPKMVSCDCCPCFGSRKKLKHAKSDTNGEAANLQGMDDDKEMLMSHMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPASLLKEAIHVISCGYEDKTEWGLELGWIYGSITEDILTGFKMHCRGWRSIYCNPRRAAFKGTAPINLSDRLNQVLRWALGSIEIFFSHHSPLWYGYKEGKLKWLERFAYANTTVYPFTSIALVAYCILPAVCLLTDKFIMPPISTFAGLYFIGLFSSIIATGILELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKATDDEDFGELYAFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKTKGPDTKLCGINC 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1347 1039 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1039 - -
Lal4g1347 1039 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Lal4g1347 1039 Pfam Zinc-binding RING-finger 27 103 IPR027934 -
Lal4g1347 1039 Coils Coil 429 449 - -
Lal4g1347 1039 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 1 1039 - -
Lal4g1347 1039 Pfam Cellulose synthase 331 1033 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lal4g1347 1039 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 484 622 IPR029044 -
Lal4g1347 1039 MobiDBLite consensus disorder prediction 136 163 - -
Lal4g1347 1039 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Lal4g1347 1039 MobiDBLite consensus disorder prediction 146 160 - -
Lal4g1347 1039 SUPERFAMILY Nucleotide-diphospho-sugar transferases 344 812 IPR029044 -
Lal4g1347 1039 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 109 IPR013083 -
Lal4g1347 1039 MobiDBLite consensus disorder prediction 211 231 - -
Lal4g1347 1039 SUPERFAMILY RING/U-box 21 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1347 Lal-Chr4 17671601 17678705 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1347 1 1039 Cell Wall Biosynthesis AT5G17420 84.904 0.0 1826
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1347 K10999 - gmx:100815436 2008.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1347 4 17671601 17678705 Lal4g1347 4 17671601 17678705 ECH