Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1346 ATGGAAGCTAGTACTGGACTGTTTACAAGTTCTCATGACAGCAATGAGCTTGTGGCAATCCAAGGGCATGATGAGGCTGTTTCAAATTGTGGTTGTGGTTGCGATTGCGATCACGGTTGTGGTTACTGCGATTTTGGTCATGGTGGGGCTAACATACATTTAACTTTATTGCAGCCTAAGCCTGTGAAGAACTTAGATGGTCAACTATGTGAGATATGTGGTGATTCAGTGGGAGTAACAGTGGATGGAGACTTATTTATAGCTTGTGATGAGTGTGGTTTCCCAGTGTGTAGGCCATGCTATGAGTATGAAAGAAGGGAAGGGACTCAAGTTTGTCCTCAGTGCCATACAAGATTCAAACGTATTAAAGGAAGTCCAAGAGTTGGTGGAGATGAAGATGAAGATGATGTGGATGATATTGAACAAGAATTCAAAATGGTAGAAGAAAAGTACAAGCTTAAGCATGGAGAGATTCTGCCAGGAAAGAAAAGCAGTGGAGATTATGATGAGAATACTAAATCAACATTGGTTAATGAAGATCTGCCAATATCTTCTTACAGTATTGGAGAACCTGGATGTGTAAAATTGAATGACAAGGTGCTAACACATGATTGGAAGTTGCACCAAGGCAATCTTTTGATTGAAACTGATGCCTCAGATGATCCTGAAAAGGCCATGAAAGAAGAAACTAGGCAGCCACTCTCAAGGAAAGTAGCGATACCGTCGGGCAAACTCAGCCCTTATAGAATGATGGTTGTAGCTCGGCTCATCATTCTAATAATCTTCTTTCAGTATAGAATCTTCCACCCGGTATCCGATGCGGTTGGACTATGGTTTGCATCTGTCGTATGTGAAATCTGGCTTGCGTTGTCATGGCTAGTTGATCAGCTTCCCAAATGGTTTCCCATTGATCGCGAGACATACCTTGATCGTCTTTCTATCAGATTTGAACCAGAGAACAAACCCAATATGCTTTCTCCAATAGATGTTTTTGTCACTACCATAGATCCAATCAAGGAACCTCCTCTAGTTACAGCTAATACTGTTCTATCAATATTGGCCTTGGATTACCCGGCTGACAAAATTTCATGCTATGTTTCTGACGATGGAGCTTCCATGCTAACCTTTGAAGCTCTTCAAGAAACTGCTGAATTTGCACGGAAGTGGGTACCTTTCTGTAAAAAATTCTCTACAGAACCTCGAGCACCGGAGAAGTACTTCTCTGAGAAGATAGATTATCTGAAGGATACGCTTCAGCCGACATATGTCAAAGAACGCCGTACGATGAAGAGAGAATATGAAGAATTTAAGGTGAGGATAAATGCACTTGTGGCCAAATCAATGAGAGTTCCCTCAGAAGGGTGGACTATGAAAGATGAGACACCATGGCCCGGAAACAATGCCAAAGATCATCCTAGTATGATACAAATACTTCTTGCTCACCGTGGAAGCCAAGAAGGAAATGAACTTCCTTGCCTTGCCTACATGTCTCGCGAGAAAAGACCCGCATTTCAACACCACAACAAAGCTGGTGCAATGAATGCCTTGCTTCGAGTATCAGCAGTGCTAAGCAATTCTCCTTTTGTGCTGAACTTGGATTGTAATCATTACGTGAATAACAGCAAAGCCGTGCGAGAGGCCATGTGTTTCTTTATGGACATACAACTTGGGAATAGCATTGGTTTTGTCCAGTTTCCACAAAGATTTGACTGCCTTGATAGGAATGATCGTTATGCCAACAAAAACACTGTTTTATTCGATATTACAATGAGATGCCTAGATGGAATTCAGGGGCCTGTTTATGTTGGTTCAGGATGTATCTTCAGAAGAAAAGCTTTATATGGCTTTGATCCTCCAAAGGCTTCGAAACGGCCGAGATTGGTACAAGTTCACTCAAAGCAAGATGAGAATGTAGATGATGCAAGCATAACAGTCACAGGAGCAGATGAAGATAACAAGCAACTATTGAAGTCAGAGATGAATTTTGAAAGTAAATTTGGAAAGTCTGAAATCTTTGTTAATTCTTCATTAACAGAAGAAGGTGGTATTGATCCTTCTTCAGGTCAGGCAGCCCTACTTAAAGAAGCCATTCATGTCATGAGTTGTAGCTATGAAGATAGAACTCTCTGGGGATATGAGGTAGGAGTGAACTATGGATCTATAGCATCTGAAATTCTGACAAGTTTCAAGATACATACACATGGCTGGAGATCTATATACTGTATGCCAAAGAGGCCTGCATTCAGGGGTACAGCTCCTATCAACCTTACAGATAGACTTAACCAAGTGCTTAGATGGGCAGTGGGATCACTTGAGATTCTATTCAGCCACCATTGCCCAATCTGGTATGGCTTCAATGAAGGAAGACTCAAAGGGCTTCAAAGGGTTGCATATATTAACAGCACTGTCTACCCTTTCAGCTCAATACCTCTCCTAATATATTGTCTCATTCCTGCCATCTGCTTGCTCACTGATAAATTCATCGTATCATCGGTAGGAACTGTAGCAGGTTTAATCTTCATTTCTCTATTCCTCTCAATATTGGCATCAGCTATTCTTGAAGTGAGATGGAGTGGAGTTAGCCTTGAAGAATGGTGGAGAAATCAGCAATTCTGGGTCATTGGCAGTGTCTCTGGACACCTATTTGCCATTATAAAAGGCCTTATGACAGCATTTTCTAAATTTAACACAAACTTCAGTGTTGTATCAAAGGCACCAAATGATGATGGAGAGTTTAATGAACTATACACAATTAAATGGACTGCACTGCTAATACCTCCAACTACAATCATAATAGCTAACATTATTGGTATTGTAGCTGGATTCACTGATGCAATGAATAGTGGTGAACATTCTTGGGGTGCACTTCTTGGTAAACTTTTTTTCTCTTTATGGGTTATTGTTCATATGTATCCATTCCTCAAAGGTTTGATGGGTAGACAGAACAGAACACCAACTCTTGTTGTTATATGGTCAGTGCTTTTAGCTTCAATCTTCTCATTGGTTTGGGTTAGAGTTGACCCTTTTGTGTTGAAAACAAAGGGTCCTGATGTCAAGCAATGTGGAATCAGTTGTTGA 3078 0.409 MEASTGLFTSSHDSNELVAIQGHDEAVSNCGCGCDCDHGCGYCDFGHGGANIHLTLLQPKPVKNLDGQLCEICGDSVGVTVDGDLFIACDECGFPVCRPCYEYERREGTQVCPQCHTRFKRIKGSPRVGGDEDEDDVDDIEQEFKMVEEKYKLKHGEILPGKKSSGDYDENTKSTLVNEDLPISSYSIGEPGCVKLNDKVLTHDWKLHQGNLLIETDASDDPEKAMKEETRQPLSRKVAIPSGKLSPYRMMVVARLIILIIFFQYRIFHPVSDAVGLWFASVVCEIWLALSWLVDQLPKWFPIDRETYLDRLSIRFEPENKPNMLSPIDVFVTTIDPIKEPPLVTANTVLSILALDYPADKISCYVSDDGASMLTFEALQETAEFARKWVPFCKKFSTEPRAPEKYFSEKIDYLKDTLQPTYVKERRTMKREYEEFKVRINALVAKSMRVPSEGWTMKDETPWPGNNAKDHPSMIQILLAHRGSQEGNELPCLAYMSREKRPAFQHHNKAGAMNALLRVSAVLSNSPFVLNLDCNHYVNNSKAVREAMCFFMDIQLGNSIGFVQFPQRFDCLDRNDRYANKNTVLFDITMRCLDGIQGPVYVGSGCIFRRKALYGFDPPKASKRPRLVQVHSKQDENVDDASITVTGADEDNKQLLKSEMNFESKFGKSEIFVNSSLTEEGGIDPSSGQAALLKEAIHVMSCSYEDRTLWGYEVGVNYGSIASEILTSFKIHTHGWRSIYCMPKRPAFRGTAPINLTDRLNQVLRWAVGSLEILFSHHCPIWYGFNEGRLKGLQRVAYINSTVYPFSSIPLLIYCLIPAICLLTDKFIVSSVGTVAGLIFISLFLSILASAILEVRWSGVSLEEWWRNQQFWVIGSVSGHLFAIIKGLMTAFSKFNTNFSVVSKAPNDDGEFNELYTIKWTALLIPPTTIIIANIIGIVAGFTDAMNSGEHSWGALLGKLFFSLWVIVHMYPFLKGLMGRQNRTPTLVVIWSVLLASIFSLVWVRVDPFVLKTKGPDVKQCGISC 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1346 1025 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 143 IPR013083 -
Lal4g1346 1025 SUPERFAMILY RING/U-box 58 138 - -
Lal4g1346 1025 SUPERFAMILY Nucleotide-diphospho-sugar transferases 340 840 IPR029044 -
Lal4g1346 1025 Pfam Zinc-binding RING-finger 60 137 IPR027934 -
Lal4g1346 1025 PANTHER CELLULOSE SYNTHASE 46 1025 - -
Lal4g1346 1025 Coils Coil 426 446 - -
Lal4g1346 1025 Pfam Cellulose synthase 328 1019 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lal4g1346 1025 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 465 617 IPR029044 -
Lal4g1346 1025 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 317 421 IPR029044 -
Lal4g1346 1025 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 46 1025 - -
Lal4g1346 1025 CDD mRING-HC-C4C4_CesA_plant 68 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1346 Lal-Chr4 17651163 17656887 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1346 1 1025 Cell Wall Biosynthesis AT5G17420 62.710 0.0 1369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1346 K10999 - gmx:100777270 1590.09