Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1340 ATGCCGGAACTAGTGAACCTATCTCTCCCTTCTCCGATTCTCTCTCTCAATAACTGCTCCAACAACCTCAACCAACCTCTTCCTCCGCTTCAACAATCTCCACGCTCCGATTTCAATTCCATGTCTAATTCACGAACCCTAACTATTGGTCACGATTCTGACAGGGAATTCCAGTTCCCGGTTAAGGAAGACGGTGTCGATGAAGGAGGTGAATCTGAACCTCGAGTTTTGAAACGAGCTCGAGGTTCAGTGGATCTGGTTAGGAAGAGTGCTCGTTCTGATAAAAGCTTTCAGGATCGAATCAAAGATCCATCTTCTCTTCCGTTCCTTGTTGGAGCTCCGAAAGAGGTTGATTGTTCCTTTTGCCAACGTTTTGTGAACCCTGGAGAGGAGATATCATGTTCTGTTCGTGGATGTGGCACATGCTACCATAAGGAATGCGCTAAAGAAGCTGGCGGAATTTTGAATAAGAAAAAATTCAAGTGCCCACAACATGCATGCTTCCTTTGCAAACAAAAATTGCACTTGTTGCGGTGTGTGCGTTGCACAATGGCATTCCATCATAAATGTGCACCATGGCCAGATGAAGTGGTGCATCTAAAGGATCATCCTGGACAAGCTATTTGTTGGAAGCATCCTTCTGATTGGCGCCTAGATAGAAAGGTCAATTTTTTCTTTTCACCAGCACCTTTTAATGTCATTTTTTTCCTAATTGCTATTAAAGGATTGTTGGTCAGAGTGAAAGGAGGTACAGCACAATCTTATTTGATGTTTCAACTTTCAACTGTCTCAGAAGTTGTCACATCTGGGATATACATGCAGCTGACAGGACTGTTGTATTTGTTGGATGAGCAGCCAGAGGCTTCAACAAGTGCCATTCCGGATCTTCCTCTTCCCTATATCAATGAGGAGTTTAAGATTGACCTCACATGGAAAGACATGGACAATATATACTTAGTGAAGAAGAAGCGTAGTGATGCAGATGATGGTGAAGGGTGCACCAATTGCAGTTCTACGTGCTCTGATGATTGTGTGTGCAGGGTCCAATGCATAAGCTGCTCAAAGGCTTGTCGTTGCTCAGAAAATTGCAACAACCGGCCATTTCGCAAGGAGAAAAAGATCAAGCTTGTCAAGACTGAACTTTGTGGATGGGGAGTAGAGGCTGCGGAAACAGTCGATAAGGGTGGATTTATTATTGAGTATATTGGAGAAGAAATGTTCTCTGATGCAGTCATTGATGATGCTTTATGTGAAAAAAGGCTCTGGGACATGAAAGACAAGAATGTACAAAATTTTTACATGTGTGAGATTCGGAAAGATTTCACAATAGATGCAACTTTCAAAGGAAATACTTCACGCTTTTTAAATCATAGCTGTGACCCCAACTGTGTTTTGGAAAAATGGCAAGTTGATGGGGAAACACGTGTTGGTGTATTCGCTGCCCGTTCAATAGAAACCGGAGAGCCATTGACATATGATTACAGGTTTGTGCAATTTGGTCCAGAGGTGAAATGCCACTGTGGTGCTGCAAATTGTCAAGGCTTTCTAGGGACAAAAAAGAAAATTGGCAAGGTAGAAATAGAACTTCATTGGGGCTCAAAACGGAAGCGATTGTCAAAAGTTTATGTTAAGAAAGCCACAGGTGAATAA 1650 0.4255 MPELVNLSLPSPILSLNNCSNNLNQPLPPLQQSPRSDFNSMSNSRTLTIGHDSDREFQFPVKEDGVDEGGESEPRVLKRARGSVDLVRKSARSDKSFQDRIKDPSSLPFLVGAPKEVDCSFCQRFVNPGEEISCSVRGCGTCYHKECAKEAGGILNKKKFKCPQHACFLCKQKLHLLRCVRCTMAFHHKCAPWPDEVVHLKDHPGQAICWKHPSDWRLDRKVNFFFSPAPFNVIFFLIAIKGLLVRVKGGTAQSYLMFQLSTVSEVVTSGIYMQLTGLLYLLDEQPEASTSAIPDLPLPYINEEFKIDLTWKDMDNIYLVKKKRSDADDGEGCTNCSSTCSDDCVCRVQCISCSKACRCSENCNNRPFRKEKKIKLVKTELCGWGVEAAETVDKGGFIIEYIGEEMFSDAVIDDALCEKRLWDMKDKNVQNFYMCEIRKDFTIDATFKGNTSRFLNHSCDPNCVLEKWQVDGETRVGVFAARSIETGEPLTYDYRFVQFGPEVKCHCGAANCQGFLGTKKKIGKVEIELHWGSKRKRLSKVYVKKATGE 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1340 549 CDD SET_ASHR3-like 373 517 - -
Lal4g1340 549 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR3 292 545 - -
Lal4g1340 549 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR3 91 223 - -
Lal4g1340 549 SMART PHD_3 118 166 IPR001965 -
Lal4g1340 549 SMART PHD_3 167 213 IPR001965 -
Lal4g1340 549 SUPERFAMILY SET domain 302 507 IPR046341 -
Lal4g1340 549 MobiDBLite consensus disorder prediction 24 48 - -
Lal4g1340 549 Gene3D SET domain 302 535 IPR046341 -
Lal4g1340 549 PANTHER SET DOMAIN PROTEINS 292 545 - -
Lal4g1340 549 PANTHER SET DOMAIN PROTEINS 91 223 - -
Lal4g1340 549 Pfam SET domain 383 494 IPR001214 GO:0005515
Lal4g1340 549 SMART set_7 372 501 IPR001214 GO:0005515
Lal4g1340 549 ProSiteProfiles Post-SET domain profile. 501 517 IPR003616 -
Lal4g1340 549 SMART PostSET_3 501 517 IPR003616 -
Lal4g1340 549 MobiDBLite consensus disorder prediction 24 54 - -
Lal4g1340 549 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 216 IPR013083 -
Lal4g1340 549 ProSiteProfiles AWS domain profile. 329 372 IPR006560 GO:0005634|GO:0018024
Lal4g1340 549 ProSiteProfiles SET domain profile. 372 495 IPR001214 GO:0005515
Lal4g1340 549 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 549 IPR025787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1340 Lal-Chr4 17569649 17578037 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1340 353 516 C2H2 Transcription Factor Family AT2G23740 35.484 1.25e-22 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lal4g1340 SET 1.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1340 - - brp:103834651 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1340 4 17569649 17578037 Lal4g1340 4 17569649 17578037 ECH