Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1236 ATGGCCGAACAAGAGTACAACCCTGACACCTTACACGATTCTGATGCCCAAACTAAGCATAAGAAGAAACTTCGCAACAGAAAAAGAGTTCGCAACACTGAACAAGTAAACCACCATTTCGATGAACAAGTGGAGAAAGAATCCGAGGAGGTGAACGAATCAAATGTGAATGATGATAATAATGATGAAAATGATGAAAATCTAGATGGAAAGGATAATACTAATGAAGAAGATGATGAAGGGGAAAAGAACTTTGTGTCTGGAATTATGAGTGATGAGTCTTTTGAGTCTTTGGGTTTGTCTGAACCTACTTATAAGGCTATTATGGATATGGGTTTCCATCGTATGACTCGGATTCAAGCAAGAGCAATTCCACCACTTCTGATGGGAAAAGATGTTCTTGGTGCTGCAAGGACCGGGGCTGGAAAAACTCTTGCCTTTTTAATTCCAGCTGTTGAATTGCTGTACAAAATTCAGTTTACACCTCGCAGTGGTACTGGTGTTGTTGTCATATGCCCGACTAGAGAGCTTTCGATTCAGACACATGCTGTAGCAAAGGAACTTCTCAAGTATCATTCACTAACTCTGGGATTGATTATTGGAGGTTCAGCTAGAAAAGGAGAAGCCGAACGCATTGTTAAAGGGGTAAATCTATTGGTAGCAACACCTGGGCGTCTTCTCGATCACCTTCAAAACACAAAAGGATTCATATATAAAAACTTGAATTGCCTCATGATTGACGAAGCTGACAGGATATTGGAATCAAACTTTGAGGAGGAAATGAAGCAGATCATTAATATACTTCCAAAGAGTAGACAAACAGCTCTGTTTTCAGCCACACAAACGAAGAAGGTTAAGGATCTTGCCCTCTTGTCATTTCAGACAACTCCTATCTACATTGATGTGGATGATGGGAGAACAAAGGTCACAAATGAAGGATTGCAGCAGGGCTATGTTGTTGTTCCCTGTGCCAAGCGCTTTGTTGTTCTCTTTTCATTCTTGAGGAGATATCAATCAAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACTCTGTTAAATTCCATGCGGACCTTCTAAAGTGCACTGGGTTGGATTGCTTAAATATTCACGGAAAACAGAATCAGCATGCCCGGACAACTACCTTCTTTAATTTCTGCAAATCAGAAAAGGGGATCTTGCTCTGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGATGTGGACTGGATTGTGCAGTATGACCCACCTGATGAACCAAAGGAATATATTCATCGGGTTGGTAGAACAGCTCGTGGGGAAGGCGGAAAAGGAAATGCTTTGCTTTTCCTGATCCCCGAAGAATTGAAATTTCTTCGCTATTTGAAGGCAGCAAAGGTCCCTGTGAAAGAGTATGCATTTGATGACAAGAAGCTTGTGAATGTACAGTCGCAACTGGAGAAATTGGTGGCTGGCATTTATCACTTGAACAATATGGCTAAAGATGCTTATAGGTCGTACTTATTATCATACAATTCACACTCTATGAAGGATATATTCAACGTTCACCGCCTTGATTTACTGGCTGTTGCTGCTTCTTTTTGTTTTTCAAACCCACCAAAGGTGAATCTGAACATAGACAGCAGTGCTTCGAAACATAAGAAGAAAATTCGCAAGGTGGAAGGAATCAAGCATGAGTTTCAGAGCCTAGATGAGTTGGACTTGGACTCAGATCCTAAATCTGTGATTTCTTTAGAGGATACAGGTTTGTGA 1752 0.4087 MAEQEYNPDTLHDSDAQTKHKKKLRNRKRVRNTEQVNHHFDEQVEKESEEVNESNVNDDNNDENDENLDGKDNTNEEDDEGEKNFVSGIMSDESFESLGLSEPTYKAIMDMGFHRMTRIQARAIPPLLMGKDVLGAARTGAGKTLAFLIPAVELLYKIQFTPRSGTGVVVICPTRELSIQTHAVAKELLKYHSLTLGLIIGGSARKGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLNCLMIDEADRILESNFEEEMKQIINILPKSRQTALFSATQTKKVKDLALLSFQTTPIYIDVDDGRTKVTNEGLQQGYVVVPCAKRFVVLFSFLRRYQSKKVMVFFSSCNSVKFHADLLKCTGLDCLNIHGKQNQHARTTTFFNFCKSEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELKFLRYLKAAKVPVKEYAFDDKKLVNVQSQLEKLVAGIYHLNNMAKDAYRSYLLSYNSHSMKDIFNVHRLDLLAVAASFCFSNPPKVNLNIDSSASKHKKKIRKVEGIKHEFQSLDELDLDSDPKSVISLEDTGL 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1236 583 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 455 IPR027417 -
Lal4g1236 583 Gene3D - 310 560 IPR027417 -
Lal4g1236 583 SMART ultradead3 112 317 IPR014001 -
Lal4g1236 583 CDD DEADc_DDX18 104 301 IPR044773 GO:0003724|GO:0005524
Lal4g1236 583 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 313 473 IPR001650 -
Lal4g1236 583 MobiDBLite consensus disorder prediction 1 20 - -
Lal4g1236 583 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 50 541 - -
Lal4g1236 583 MobiDBLite consensus disorder prediction 54 76 - -
Lal4g1236 583 PANTHER RNA HELICASE 50 541 - -
Lal4g1236 583 MobiDBLite consensus disorder prediction 30 53 - -
Lal4g1236 583 SMART helicmild6 353 434 IPR001650 -
Lal4g1236 583 Pfam Helicase conserved C-terminal domain 332 433 IPR001650 -
Lal4g1236 583 CDD SF2_C_DEAD 314 444 - -
Lal4g1236 583 Pfam DEAD/DEAH box helicase 117 288 IPR011545 GO:0003676|GO:0005524
Lal4g1236 583 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 93 121 IPR014014 GO:0003724
Lal4g1236 583 MobiDBLite consensus disorder prediction 1 82 - -
Lal4g1236 583 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 245 253 IPR000629 -
Lal4g1236 583 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 124 299 IPR014001 -
Lal4g1236 583 SMART DUF4217_3 474 537 IPR025313 -
Lal4g1236 583 Pfam Domain of unknown function (DUF4217) 475 535 IPR025313 -
Lal4g1236 583 Gene3D - 12 303 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1236 Lal-Chr4 16287665 16303253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1236 77 453 Eukaryotic Initiation Factors Gene Family AT3G19760 27.249 1.48e-45 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1236 K13179 - gmx:100798290 896.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1236 4 16287665 16303253 Lal4g1236 4 16287665 16303253 ECH