Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1213 ATGGCTACTACTCATTCTTCTCTCGACCACGCTCTTCGCGATGTAGAAGACTACGTTTCGGCAAATGAACCAGAAGGTTTGGCATGGGATACATTTCGTGATGTTTACGATCTTGTGCAAAACGGAAATGCAGCATTTCGTGAGAACAGAATGGAAGAGGCAATCAGCTTTTACTCAAGGGCCAATAACATCAAATACGGGGATCCGATCATCCTGAGCAATCGAAGTGCAGCTTATATTAGGATTAGTCAATATTTAAAGAACAGAGCTCCATCAGCTTCAGAACATAGACCATTGAGTGGGCTTGATCCTACAACACTTGCTGAATTGGGTTTGAAGGATGCTGATAAACTTGTTGAACTCCAAACTAATTCAGTAAAATCATACATTTTGAAAGCTAACGCTTTATTTCTGTTGGATAAATATGCGGAGGCCCGGGATGTTATTCTTTCAGGCCTTCAAGTTGATCCATTTAGTAATTCTCTTCGGGCTTCTCTTCAAAATTTGGAAAGAGAGTCATGCAGATCAACTGGCACAAATATGCATGTACAACCAGATCGTAATGATGACTTTGATTGCACTCTTTGCCTGAAGTTACTGCATGAACCTGTTACAACTCCTTGTGGACACTCTTTTTGCCGGTCATGTCTATTTCAATCAATGGATCGTGGTTGGTACCATCACTTGTTGATTATATTCTCTGTTTCATATATTGTATATTATGCTGATTCTTGTCCTCATTTATTAGGGAACAGATGCCCGTTGTGCAGGACAGTTCTGTTTATTAGTCCCAGAACGTGTTCCATCAGTGTGACATTGAAGAACATCATACAAAAGAACTTTCCAGAGGAATATGCTGAACGCAAGAAAGAGCATGATAGTTTAATCAACTTTGGTGTAGATTTGCTCCCTCTTTTTGTTATGGATGTTGTCATCCCATGTCAAAAGTTTCCACTCAATATATTTGAACCTCGGTATAGACTAATGATAAGAAGAATAATGGAAGGCAATCATCGGATGGGAATGGTTATAATTGAGTCTTCAACAGGTTCCTTAGCCGAGTATGCTTGTGAAGTTGAAATCACAGAGTGTGAGCCACTTCCAGATGGTCGTTTCTATATAGAGATTGAAAGTCGCAGGAGATTTCGCATTATCCATTCTTGGAATCAAGATGGATATCGTGTTGCAGAGGTTGAATGGATACAGGATATTATTCCACCAGAAGGGACAAGTGAAAGCGAGGCGTTATTGGAATTAACACATAATGCAGCAGAAAGTGTCAGATCATGGATAAGAAGAGCTAAAGAAGAAGCAAGACTAGATCAAAGACGCCTTGAGAGACTAGCGAGTGTTGAAGCGATGATGCCCTCATTTCGAGATCCCGAGCGCTTCAGTTTTTGGTTGGCTACCCTGTCCAATCGGAGGCCGTCGGAAAGATTGGATCTCCTACGCATAAGAGATACTACTGAGAGGATTAGACGAGGCCTGATATTTCTCCGAGCAGAGGAACAAGGCTGCAGAATTCAATAA 1530 0.4111 MATTHSSLDHALRDVEDYVSANEPEGLAWDTFRDVYDLVQNGNAAFRENRMEEAISFYSRANNIKYGDPIILSNRSAAYIRISQYLKNRAPSASEHRPLSGLDPTTLAELGLKDADKLVELQTNSVKSYILKANALFLLDKYAEARDVILSGLQVDPFSNSLRASLQNLERESCRSTGTNMHVQPDRNDDFDCTLCLKLLHEPVTTPCGHSFCRSCLFQSMDRGWYHHLLIIFSVSYIVYYADSCPHLLGNRCPLCRTVLFISPRTCSISVTLKNIIQKNFPEEYAERKKEHDSLINFGVDLLPLFVMDVVIPCQKFPLNIFEPRYRLMIRRIMEGNHRMGMVIIESSTGSLAEYACEVEITECEPLPDGRFYIEIESRRRFRIIHSWNQDGYRVAEVEWIQDIIPPEGTSESEALLELTHNAAESVRSWIRRAKEEARLDQRRLERLASVEAMMPSFRDPERFSFWLATLSNRRPSERLDLLRIRDTTERIRRGLIFLRAEEQGCRIQ 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1213 509 Coils Coil 431 451 - -
Lal4g1213 509 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 11 502 - -
Lal4g1213 509 SMART ring_2 193 256 IPR001841 -
Lal4g1213 509 Gene3D - 424 501 - -
Lal4g1213 509 SUPERFAMILY PUA domain-like 303 499 IPR015947 -
Lal4g1213 509 ProSiteProfiles Zinc finger RING-type profile. 193 257 IPR001841 -
Lal4g1213 509 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 297 IPR013083 -
Lal4g1213 509 SUPERFAMILY RING/U-box 186 282 - -
Lal4g1213 509 SMART lon_5 302 501 IPR003111 -
Lal4g1213 509 Pfam zinc finger of C3HC4-type, RING 193 220 - -
Lal4g1213 509 SUPERFAMILY TPR-like 35 166 IPR011990 GO:0005515
Lal4g1213 509 ProSiteProfiles Lon N-terminal domain profile. 300 501 IPR003111 -
Lal4g1213 509 Gene3D - 301 403 IPR046336 -
Lal4g1213 509 Pfam ATP-dependent protease La (LON) substrate-binding domain 303 499 IPR003111 -
Lal4g1213 509 Gene3D Tetratricopeptide repeat domain 34 172 IPR011990 GO:0005515
Lal4g1213 509 ProSitePatterns Zinc finger RING-type signature. 208 217 IPR017907 -
Lal4g1213 509 PANTHER RING FINGER PROTEIN 127 11 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1213 Lal-Chr4 15896656 15913357 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1213 186 260 C3H Transcription Factor Family AT1G74990 30.667 2.46e-07 48.1