Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1204 ATGGGAATGGATTACTATATAATACTGAAAGTGAATAGAAACGCCAGCGAGGATGATTTGAAGAAAGCATATAAGAGACTCGCAATGCTTTGGCACCCAGACAAAAACATTGTTAATAAAAATGAATCAGAAGCCAAATTCAAATTAATTTCTGAAGCCTACGATGTTTTAAGTGATCCTCAAAAACGTCATATCTACGATCTCTACGGTGAGGAAGCGCTTAAGTCTGGACAGTTTCCGCCGCCACCTCAATCCTCATCGTCATCGTCGTCATCATCATCGTCATCATCATCACGTGCTTATCACCAGCGCTGTAACCCTACTACCCCTACCTCGTTCAACTTCAATCCCCGTGATGCTGATGACATTTACGCCGAGTTTTTTGGCAGCGATGGTGATGACGCCGGCGGTGGAAGCGGCGTTAGAGGGCGTAGAGACGGGTTTTTTAAGACATCGAATGGATCCGTGTTCGGGGGAGTGGGAAGGAAGGCTGCTGCTGTGGAAAATGTCTTGCCGTGTACTTTGGAAGATCTTTATAAAGGCGTCAAGAGAAAAATGAAGATCTCGAGGAATGTCTTTGATGCGTTTGGCAAGTGTCAAATGGTGGAGGAGATTTTGACTATTGAACTAAAACGTGGCTGGAAGAAAGGAACAAAGATAACTTTCCCTGAGAAAGGTAACCAGGAGCCTGGTGTCATTGCGGCAGATATAATTTTTGTGATAGATGAGAAACCACACGCTCTTTACAAAAGGGATGGTAATGATTTGATACTCAACCAAGAGATAACTCTTCTAGAGGCCCTTACAGGTAAAACCATGGCCCTCACCACCTTGGATGGAAGAAGTCTCATGATCCCGCTGACAGATATTGTCAAACCATGTGCTGAGGTTGTTATCCCAAACGAAGGAATGCCGATATCAAAAACGCTCGGGAGGAAGGGGAATTTAAGAATTAAGTTTGATGTGAAGTACCCTTCAAGGCTAACTACAGAGCAGAAATCTGATCTGAGGAGAGTATTAGGTGGAATCTCATAA 1035 0.4386 MGMDYYIILKVNRNASEDDLKKAYKRLAMLWHPDKNIVNKNESEAKFKLISEAYDVLSDPQKRHIYDLYGEEALKSGQFPPPPQSSSSSSSSSSSSSSRAYHQRCNPTTPTSFNFNPRDADDIYAEFFGSDGDDAGGGSGVRGRRDGFFKTSNGSVFGGVGRKAAAVENVLPCTLEDLYKGVKRKMKISRNVFDAFGKCQMVEEILTIELKRGWKKGTKITFPEKGNQEPGVIAADIIFVIDEKPHALYKRDGNDLILNQEITLLEALTGKTMALTTLDGRSLMIPLTDIVKPCAEVVIPNEGMPISKTLGRKGNLRIKFDVKYPSRLTTEQKSDLRRVLGGIS 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1204 344 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Lal4g1204 344 SUPERFAMILY Chaperone J-domain 3 84 IPR036869 -
Lal4g1204 344 Gene3D - 246 326 - -
Lal4g1204 344 PRINTS DnaJ domain signature 6 24 IPR001623 -
Lal4g1204 344 PRINTS DnaJ domain signature 24 39 IPR001623 -
Lal4g1204 344 PRINTS DnaJ domain signature 42 62 IPR001623 -
Lal4g1204 344 PRINTS DnaJ domain signature 62 81 IPR001623 -
Lal4g1204 344 Pfam DnaJ C terminal domain 170 325 IPR002939 -
Lal4g1204 344 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 343 - -
Lal4g1204 344 CDD DnaJ 4 59 IPR001623 -
Lal4g1204 344 Gene3D DnaJ domain 2 139 IPR036869 -
Lal4g1204 344 Pfam DnaJ domain 4 67 IPR001623 -
Lal4g1204 344 Gene3D - 165 244 - -
Lal4g1204 344 SUPERFAMILY HSP40/DnaJ peptide-binding domain 170 246 IPR008971 GO:0006457|GO:0051082
Lal4g1204 344 CDD DnaJ_C 171 328 - -
Lal4g1204 344 SMART dnaj_3 3 62 IPR001623 -
Lal4g1204 344 MobiDBLite consensus disorder prediction 74 117 - -
Lal4g1204 344 SUPERFAMILY HSP40/DnaJ peptide-binding domain 249 334 IPR008971 GO:0006457|GO:0051082
Lal4g1204 344 MobiDBLite consensus disorder prediction 79 116 - -
Lal4g1204 344 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Lal4g1204 344 PANTHER BNAA06G20720D PROTEIN 2 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1204 Lal-Chr4 15728130 15732808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1204 5 74 C2H2 Transcription Factor Family AT1G74250 35.135 7.82e-09 55.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g1204 4 15728130 15732808 Lal4g1204 4 15728130 15732808 ECH