Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g1173 ATGTCACATGTCATTATTTCAGCCTGTACTGGAACCTCCGGTACAGGAGAGGATCCTTATTCTTGCACAAGAGATAATGCTAAAGTTCCTGGTAGAAGCACCCGTTCCATAGCTCATCTAAGTCCAATTGTACTTCGATACAGCGGTGAAGGTAAACATGGGACTCTACCTTCTCCGAGATCTGAAGGTGACATAATTTCCTCCCAACATCTAAAAGCCTTCACATTCAACTATCTGAAGAACGCTACGAGAAACTTTCATCCAGATAGTCTAATAGGAGAAGGGGGATTTGGTAATGTCTATAAGGGTTGGATTGATGAGCAATTCCTTGGAGCTTCAAGGCCTGGGTCTGGAATAATGGTTGCTGTGAAGAAGCTTAAACCTGAAGGTTTTCAAGGCCATAATGAGTGGCTGTCTGAAGTGAATTATCTTGGCCAACTTCATCATCGAAATCTTGTCAAACTATATGGATACTGCCTGGATGGGATTAATCTGCTTCTATTTGTAAATCAAGATTTACAAATATATATTTTCATACCCTGGCATCAAATTGCTCCAACTCTGAAACCGTTTCGTGCAGGGGGAGCCCAACCACTTTCTTGGGCAACAAGGATAAAGGTTGCCATTGGTGCTGCTCAAGGTCTCACCTTCTTACACAACTCTAAGCAACAAGTTATCTACCGTGATTTCAAGGCTTCTAATATTTTATTAGATTCGGAATTTAATGCAAAACTATCAGACTTTGGTCTTGCCAAAGCAGGGCCAACCGGAGATCGTTCACATGTTTCTACTCGTGTTCTGGGCACCCAAGGCTATGCTGCTCCTGAATATATTGCTACAGGTCGGCTAACAACAAAGTGCGATGTCTATAGCTTTGGAGTTGTGCTATTGGAACTACTATCAGGGCGCCGTGCCATTGATAAAACAAAACCTGGAGTAGAACAAAACCTGGTAGAATGGTCTAGACCTTATTTGCATGATAGGAGGAAGTTGCTCCGAATTATGGATACCAAGTTAGCAGGGCAGTATCCTAAAAGGGCAGCATATACAACTGCAATTCTTGCATTACAATGCACTAGTGAGGCCAAAATCAGACCACAAATGTCTGAGGTTTTAGCTACTTTGGAACTGCTACCAACCATGAGACACTCAATTTCAGGCAACCCATGTAGATCGGAGAGGAAGTCGATCTCAATCCCCAGAGATCGAGACCGAATGTCTGTCTCTTCCAGTCCCATGACAAAATCCCCTTTGAGACATAATCATCATCGTTATTCTGTAGACAGGAAGTCCATGTCTAGCTTTATTAGTGATATCTCTGTTAGGTCTCCACTGACATCCCCAGCAATATTATCCCCTATGGGATGA 1368 0.4284 MSHVIISACTGTSGTGEDPYSCTRDNAKVPGRSTRSIAHLSPIVLRYSGEGKHGTLPSPRSEGDIISSQHLKAFTFNYLKNATRNFHPDSLIGEGGFGNVYKGWIDEQFLGASRPGSGIMVAVKKLKPEGFQGHNEWLSEVNYLGQLHHRNLVKLYGYCLDGINLLLFVNQDLQIYIFIPWHQIAPTLKPFRAGGAQPLSWATRIKVAIGAAQGLTFLHNSKQQVIYRDFKASNILLDSEFNAKLSDFGLAKAGPTGDRSHVSTRVLGTQGYAAPEYIATGRLTTKCDVYSFGVVLLELLSGRRAIDKTKPGVEQNLVEWSRPYLHDRRKLLRIMDTKLAGQYPKRAAYTTAILALQCTSEAKIRPQMSEVLATLELLPTMRHSISGNPCRSERKSISIPRDRDRMSVSSSPMTKSPLRHNHHRYSVDRKSMSSFISDISVRSPLTSPAILSPMG 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g1173 455 MobiDBLite consensus disorder prediction 386 419 - -
Lal4g1173 455 ProSitePatterns Protein kinases ATP-binding region signature. 92 125 IPR017441 GO:0005524
Lal4g1173 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Lal4g1173 455 Pfam Protein tyrosine and serine/threonine kinase 90 371 IPR001245 GO:0004672|GO:0006468
Lal4g1173 455 SUPERFAMILY Protein kinase-like (PK-like) 64 377 IPR011009 -
Lal4g1173 455 Gene3D Transferase(Phosphotransferase) domain 1 187 390 - -
Lal4g1173 455 PANTHER OS01G0588500 PROTEIN-RELATED 21 420 - -
Lal4g1173 455 ProSiteProfiles Protein kinase domain profile. 86 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal4g1173 455 Gene3D Phosphorylase Kinase; domain 1 58 170 - -
Lal4g1173 455 PANTHER PROTEIN KINASE 2B, CHLOROPLASTIC 21 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g1173 Lal-Chr4 15317880 15324901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g1173 18 380 Glycoside Hydrolase AT3G07070 43.562 2.40e-94 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lal4g1173 PK_Tyr_Ser-Thr 2.1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g1173 - - lang:109338813 618.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1830 13 17757446 17763312 Lal4g1173 4 15317880 15324901 ECH
Lal4g1173 4 15317880 15324901 Lal4g1173 4 15317880 15324901 ECH