Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0840 ATGGAGAACATGTGCGGCTTCCACTATTCAGAACAGTCATCAATGGTTCCTCCGCCATTACCAGAGACCAGTCTTAACTTCATTTCATCGGATCTTCAATTTGTCCGGTCTTCTTCATCATCATCGGATGAAGTGTTATCTAAAGCTGTCTTTCAGCAGAACAAGTTGGAAAAGGATGTTAATGTTTCTCTTCAACCTAAACTTGCTTCTCATCCTCTTTTTCCTCAGCTCCTTCATGCTTATATCGATTGCCATAAGGTGGGAGCGCCACCTGAAATTGCAAAACTATTAGATGAAATGACGAGAGGAGAAAATGGTGGTGTGTGCCAGATATCGACCTTCATTGGTGCTGATCCTGAACTTGACGATTTCATGGAAACATATCTGAATTTACTGGTGAAGTACAAATCAGATATTTCGAAGCCTTTTGAGGAAGCAACCATTTTCCTCAACGACATGGAAACACAGCTTAACTCAATCTGCAACAACATTCCCAACATTTCTGCACCTGATGAAGTGAATGGAGCATCAAAAAAGGAATTTAGTATAGAGGAGAAAGAAGCAATTGAAAGCAAGAGGATCAATGAAGATCGAGAACTGAAGGATAATCTTCTGCATAGATATAGTGGCTACATTAGTAACCTGAAACATGAATTATCCAAAACGAAAAAGAATAAGAAAATGTTACCTGAAGAAGCAAAGCAAATCTTACTTGCATGGTGGAATATTCACTTTAAATGGCCATACCCAACGGATGAGGATAAGGTTGCCCTAGCTGAATGTACTGGTCTAGACCAGAAACAGGTAAACAATTGGTTTATAAACCAAAGGAAGCGTCACTGGAAACCAACACAAGAAATGCAAACAATTTTAGAAGGCTTATATGGACCTTTCTGA 897 0.3935 MENMCGFHYSEQSSMVPPPLPETSLNFISSDLQFVRSSSSSSDEVLSKAVFQQNKLEKDVNVSLQPKLASHPLFPQLLHAYIDCHKVGAPPEIAKLLDEMTRGENGGVCQISTFIGADPELDDFMETYLNLLVKYKSDISKPFEEATIFLNDMETQLNSICNNIPNISAPDEVNGASKKEFSIEEKEAIESKRINEDRELKDNLLHRYSGYISNLKHELSKTKKNKKMLPEEAKQILLAWWNIHFKWPYPTDEDKVALAECTGLDQKQVNNWFINQRKRHWKPTQEMQTILEGLYGPF 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0840 298 Pfam KNOX1 domain 67 102 IPR005540 GO:0003677|GO:0005634
Lal4g0840 298 CDD homeodomain 223 283 IPR001356 GO:0003677
Lal4g0840 298 Pfam ELK domain 199 220 IPR005539 GO:0003677
Lal4g0840 298 SMART ELK_2 199 220 IPR005539 GO:0003677
Lal4g0840 298 ProSiteProfiles 'Homeobox' domain profile. 220 283 IPR001356 GO:0003677
Lal4g0840 298 Gene3D - 225 287 - -
Lal4g0840 298 Pfam Homeobox KN domain 240 279 IPR008422 GO:0003677|GO:0006355
Lal4g0840 298 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 26 298 - -
Lal4g0840 298 ProSiteProfiles ELK domain profile. 199 219 IPR005539 GO:0003677
Lal4g0840 298 ProSitePatterns 'Homeobox' domain signature. 258 281 IPR017970 GO:0000981|GO:0006355
Lal4g0840 298 SMART KNOX2_2 111 162 IPR005541 GO:0003677|GO:0005634
Lal4g0840 298 SMART KNOX1_2 62 106 IPR005540 GO:0003677|GO:0005634
Lal4g0840 298 Pfam KNOX2 domain 115 161 IPR005541 GO:0003677|GO:0005634
Lal4g0840 298 SUPERFAMILY Homeodomain-like 222 289 IPR009057 -
Lal4g0840 298 SMART HOX_1 222 287 IPR001356 GO:0003677
Lal4g0840 298 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 26 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0840 Lal-Chr4 7182591 7192643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0840 1 287 Homeobox Transcription Factor Family AT1G23380 48.589 1.58e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lal4g0840 KNOX2 7.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0840 - - gmx:102662019 331.257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0840 4 7182591 7192643 Lal4g0840 4 7182591 7192643 ECH