Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0831 ATGGGTATCAACATAAAAGGAGAAATAGAGAGAGTGAATGGGAATGAATTGAGTTACAGTGAATTTGCAAAGAGATATATGGATAAGAATTACCCTGTTTTGGTCACTGGATTAATGGACCTTCTTCATTGGAGAGCTTGTTCTGATTGGGTCACTCCTCTTGGCCAACCCAATTTTCATTTTTTCTCTTCTCACTTTGGGGTTTCTGAAGTTCAGGTTGCAGATTGTGACACGAGGGAATTTACCGATCAGAAAAGAGAGGAGATGTCGGTCTCTGATTTTATAGAACACTGCCTTCGAGTGGAGGGTTCTGCAGTTCAGTGCAATAATGAAAATCATACAAGTAATGATCACTCTGTACCATATTTGAAGGATTGGCATTTTGTAAAGGAGTATCCTGAATATGCAGCATACATCACTCCAATGTTCTTTTGTGATGATTGGCTCAACCTGTATCTTGACAACTTCAGAATGCATATAGATTCCGACACATGCCAACAGAACGAGGAAATATGTAGCTCTGACTATCGTTTTGTTTACATGGGGGTGAAAGAATCTTGGACCCCTCTTCACGCCGATGCTTTCCGGTCCTATAGCTGGTCCTCAAATGTCTGTGGAAAGAAGAGATGGCTTTTTCTAGATCCTTCCCAGAATATGAAAAACTGTGTATATAATGTCTTTGATGAAGTATCTGACTCAAAATTTCCTGGTTTTAAAAAGGCTATCTGGTTAGAATGTACACAAGAAGCGGGTGAAATTATATTTGTTCCCAGTGGTTGGTATCATCAAGTTCATAATTTGGAAGATACGATATCTATAAACCACAATTGGTTCAACGCCTATAACCTTTCTTGGGTGTGGAATTTACTTCTAAGGGATTACAAAGAGGCCAAGGAATACATAGAAGACATCAAGGATGTATGTGACGACTTTGAAGGTCTTTGCCAGCGTAATCTTGCTGCTAACACAGGGATGAATTTTTATGACTTCTTCACTTTAATATCATACTTCACATTGGCCAACTTGGCCTTACTTTGCTATATAAATGGAATACATGGAAGTCACAATGGGTTTTCATCCACAGTATCTCACCATTTATCTATGAATCTTGCATCTATAAGGAAGGTTGCATTAGAGATGAAACAGAAGCATGCTCTAGAAGGAAACCATCGTTGCGTTGCGGATATAACCAAAATATTTGAAGATACAAGGTTTTTCAAATTGTGCATGGATTTGGGAAGAACATATGCAATGATACATGAGCAACCTTTTCTGTCATCTGAATTTGTGAGCACTTCAATCCATGATTTGATGGATCTCAATGTTTTGAAAGCACACACTTCTTCACAGGTCTACACACCTGAAGATCTCATTAATATTATAGACAATGTTGTTATAGAAGAACTCTGCAGTTAA 1416 0.3821 MGINIKGEIERVNGNELSYSEFAKRYMDKNYPVLVTGLMDLLHWRACSDWVTPLGQPNFHFFSSHFGVSEVQVADCDTREFTDQKREEMSVSDFIEHCLRVEGSAVQCNNENHTSNDHSVPYLKDWHFVKEYPEYAAYITPMFFCDDWLNLYLDNFRMHIDSDTCQQNEEICSSDYRFVYMGVKESWTPLHADAFRSYSWSSNVCGKKRWLFLDPSQNMKNCVYNVFDEVSDSKFPGFKKAIWLECTQEAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLLRDYKEAKEYIEDIKDVCDDFEGLCQRNLAANTGMNFYDFFTLISYFTLANLALLCYINGIHGSHNGFSSTVSHHLSMNLASIRKVALEMKQKHALEGNHRCVADITKIFEDTRFFKLCMDLGRTYAMIHEQPFLSSEFVSTSIHDLMDLNVLKAHTSSQVYTPEDLINIIDNVVIEELCS 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0831 471 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 6 465 - -
Lal4g0831 471 SMART cupin_9 143 294 IPR003347 -
Lal4g0831 471 ProSiteProfiles JmjC domain profile. 129 294 IPR003347 -
Lal4g0831 471 SUPERFAMILY Clavaminate synthase-like 6 306 - -
Lal4g0831 471 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE JMJD4 6 465 - -
Lal4g0831 471 Gene3D Cupin 3 279 - -
Lal4g0831 471 Pfam Cupin-like domain 21 277 IPR041667 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0831 Lal-Chr4 7042964 7049496 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0831 7 286 Glycosyltransferase AT1G78280 24.407 1.03e-17 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lal4g0831 Cupin_8 2.5e-18 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0831 - - gmx:100803814 754.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0831 4 7042964 7049496 Lal4g0831 4 7042964 7049496 ECH