Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0788 ATGCCGCAAGATTCCTCAGAACAAGACCTTGATGATTCCGAGTTTGTCGAAATTGATCCTACCGCTAGATACGGCCGGTATAAGGAAGTGTTAGGGAAAGGAGCTTTCAAGAAAGTATATCGCGCTTTTGATGAGTTGGAAGGAATTGAAGTGGCTTGGAATCAGGTTAAAGTGGCGGATCTATTGCGTAACTCTGTAGATTTGGAGCGCCTTTATTCAGAAGTTCATTTGCTCAAGACATTGAAGCATAAAAATATAATTAAATTTTACAATTCATGGGTTGACACTAAGAATGAAAACATCAACTTCATAACTGAAATTTTCACTTCAGGAACATTACGCCAATACCGGCAGAAACATAAGCACGTTGATTTGAGAGCTTTGAAAAAATGGTCTAGGCAGATATTGGAGGGCCTTTTCTATCTTCATAGTCATAATCCACCAGTTATTCATCGAGACCTTAAGTGTGACAACATTTTTGTCAATGGGAATCAAGGGGAGGTGAAAATTGGTGATTTAGGATTGGCAGCTATTCTTCAAAAGGCTAATTCAGCTCACAGTGTTATAGGTACCCCAGAGTTCATGGCCCCGGAACTTTATGAAGAGGAATACAATGAGCTTGTTGACATCTATGCTTTTGGCATGTGCTTGCTGGAGTTGGTGACTGTTGAGTACCCATATGTCGAATGTACCAATGCTGCTCAAATATACAAGAAAGTGACATCTGGAGTAAAGCCAGCATCGTTGGGAAAAGTGACAGATATTGAAGTTAAAACATTTATAGAAAAGTGTATCGCTAATGTATCTGAACGTTTGCCTGCAAAGGATCTCTTGATGGACCCCTTCCTTCAGTCAGATTTTAAAAGTGAAAGTGTAGGTCATTCTTCAAGGTCTGAAATCCATCATTCAGGAAATAGTCATGACAACCAAGCCATTGGAAAAAGTGTTGTAGAGATTTCTGCTGAGACAAGCAGGGAATTCACAGTGGAAGGTCAAAGGAGAGATATTAATACAATATTCTTAAAACTGCGAATAGTAGACTCCTCAGGTAATATTCGCAATATCCACTTCCCTTTTGATGTTGCAGCAGACACTTCAATCTCCGTTGCTAGTGAAATGGTGGAGGAGTTGGAGCTTACTAATCAAGATGTTACGACCATTGCTGAGATGATTGACTCAGAAATTCGACATCACATTCCTGATTGGAATCCAAGTGAAAATCATGTCAATTGTTTTTGCCAAGATTTAACAAATTCAAGTGACGGTACACCTGAAACTTGTCATGAGGCTTCTCCTGTTGTTTATGATTCTCTCATTTCTCCTGGTAGTCTTGCATTAGAAACATTACCTTCAGGTCGTAAGTACTGGTCAGACTCACCCAAGGCATTTGGTGGAAATTCTCCATGTAGGCATGGTGCTGCAAACTTGTCTAATGAAGTGGATGCAAATGCTGAGGAAGACAGCTTCAATGAAAATGGTGCTATTTCAGTTGAATTAGATCCTCGTGACGAGATCTGTATTGGTGATTATAGTACAGAAAAGGAATATGATGGGACTGTTGATTCCACTTTCAGTGAAAGAAGTATTACATCTGGCTATTTAGATGCAACCGGTGACAAATTTTCTCTGGAAGAAATGTCTGGAATTTCGAAAGATTCTGATATAGAAGACATGACTAAAATAGTCATAAAATTGGAGAGTTTGTTAGTAAGACAAAAAGAGGAGTTACATGAACTAAAGACGAAGCACAAATTAGCTATCTCAGATCTTTTGAAGGAAATTTCTCCACAAATGTGCCAAGAAGTTCTAAATATATGCAAGCTGCAAATGCCTGACTATGGTAATGTAGGGTGA 1854 0.39 MPQDSSEQDLDDSEFVEIDPTARYGRYKEVLGKGAFKKVYRAFDELEGIEVAWNQVKVADLLRNSVDLERLYSEVHLLKTLKHKNIIKFYNSWVDTKNENINFITEIFTSGTLRQYRQKHKHVDLRALKKWSRQILEGLFYLHSHNPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQKANSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTVEYPYVECTNAAQIYKKVTSGVKPASLGKVTDIEVKTFIEKCIANVSERLPAKDLLMDPFLQSDFKSESVGHSSRSEIHHSGNSHDNQAIGKSVVEISAETSREFTVEGQRRDINTIFLKLRIVDSSGNIRNIHFPFDVAADTSISVASEMVEELELTNQDVTTIAEMIDSEIRHHIPDWNPSENHVNCFCQDLTNSSDGTPETCHEASPVVYDSLISPGSLALETLPSGRKYWSDSPKAFGGNSPCRHGAANLSNEVDANAEEDSFNENGAISVELDPRDEICIGDYSTEKEYDGTVDSTFSERSITSGYLDATGDKFSLEEMSGISKDSDIEDMTKIVIKLESLLVRQKEELHELKTKHKLAISDLLKEISPQMCQEVLNICKLQMPDYGNVG 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0788 617 Coils Coil 562 582 - -
Lal4g0788 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Lal4g0788 617 SMART serkin_6 25 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal4g0788 617 SUPERFAMILY Protein kinase-like (PK-like) 28 284 IPR011009 -
Lal4g0788 617 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 6 611 - -
Lal4g0788 617 Gene3D Transferase(Phosphotransferase) domain 1 108 290 - -
Lal4g0788 617 Gene3D - 337 424 - -
Lal4g0788 617 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 341 395 IPR024678 GO:0004674|GO:0005524
Lal4g0788 617 ProSiteProfiles Protein kinase domain profile. 25 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal4g0788 617 PANTHER SERINE/THREONINE-PROTEIN KINASE-RELATED 6 611 - -
Lal4g0788 617 Pfam Protein kinase domain 28 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal4g0788 617 Gene3D Phosphorylase Kinase; domain 1 9 106 - -
Lal4g0788 617 CDD STKc_WNK 23 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0788 Lal-Chr4 6720825 6724744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0788 11 402 MAP Kinase Kinase Kinase AT3G22420 54.853 8.31e-165 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Lal4g0788 Pkinase 7.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0788 K08867 - gmx:100272204 825.469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0788 4 6720825 6724744 Lal4g0788 4 6720825 6724744 ECH