Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0758 ATGTCTATCACTTCCTTCAATATGTCACACTCTTCTCTTCTCTCTTTCCCTTCCTCTCTTTTCCATAACTCCATAACCAAACATTACTTTCTCACTATCCCATCATCCAAACACCTCTCATCCTTCAAAAACCCTTCACTTTCTCTCACCATCTCCACCAAAACGCACCGTTTCCCTTTCCTCGCATTCGTAGCGCAGACTTCGGAAACGGATTCGGCTCAACAGGAAAACAATGACAACACATTTACATTTCAAGACCAGGAAGTTGGTGAACCTCATGCCGCCCTTTCAGGTTGGGAGCCCAATGCCGAAGACGCCGAAATCGAAGCCGAAATCGAAGGCGAAGAAGAAGAGGAAGAAGAAGAAGAAGGGGGATTTGAGGATGGTGGTTTTTCGGAACCACCTGAAGAGGCAAAGGTTTTTGTTGGAAACTTGCCTTATGACATTGATAGTCAGAAATTGGCTGTGCTTTTTGAGGAGGCTGGAACTGTTGAGGTTGCTGAGGTTATTTTTAATAGGGACACTAATCAGAGTCGCGGATTCGGGTTTGTGACCATGAGTACAGTTGAAGAAGCTGATAATGCTGTGGAGAAGTTCAACCGCTATGGCTTAGATGGAAGACAATTGACTGTTAATAAGGCTTCTCCTAGAGGATCTAGGGCCGAACGCCCACCTCGTAGCTTTGAAGCTGGCTCAAGAGTCTATGTCGGTAACTTGCCATGGGATGTGGATAATAATCGCCTGGAGCAAATTTTCAGCGAACATGGTAAGGTTGAGAATGCTCGGGTAGTCTATGACAGAGAGACTGGCCGATCACGTGGCTTTGGCTTTGTCACTTTTTCTAATGAGACTGAGATGAATGACGCCATTGCTGCTCTCGATGGTCAGGGTTTAGAGGGGAGGGCAATCAGAGTGAATGTTGCAGAGGACAGGCCCAGACGCAGCTCCTTTTAA 954 0.4644 MSITSFNMSHSSLLSFPSSLFHNSITKHYFLTIPSSKHLSSFKNPSLSLTISTKTHRFPFLAFVAQTSETDSAQQENNDNTFTFQDQEVGEPHAALSGWEPNAEDAEIEAEIEGEEEEEEEEEGGFEDGGFSEPPEEAKVFVGNLPYDIDSQKLAVLFEEAGTVEVAEVIFNRDTNQSRGFGFVTMSTVEEADNAVEKFNRYGLDGRQLTVNKASPRGSRAERPPRSFEAGSRVYVGNLPWDVDNNRLEQIFSEHGKVENARVVYDRETGRSRGFGFVTFSNETEMNDAIAALDGQGLEGRAIRVNVAEDRPRRSSF 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0758 317 PANTHER OS02G0815200 PROTEIN 3 317 - -
Lal4g0758 317 CDD RRM_HP0827_like 139 216 - -
Lal4g0758 317 SUPERFAMILY RNA-binding domain, RBD 134 229 IPR035979 GO:0003676
Lal4g0758 317 MobiDBLite consensus disorder prediction 104 130 - -
Lal4g0758 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 232 310 IPR000504 GO:0003723
Lal4g0758 317 CDD RRM_HP0827_like 233 309 - -
Lal4g0758 317 PANTHER RIBONUCLEOPROTEIN 3 317 - -
Lal4g0758 317 SUPERFAMILY RNA-binding domain, RBD 226 315 IPR035979 GO:0003676
Lal4g0758 317 Coils Coil 103 123 - -
Lal4g0758 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 216 IPR000504 GO:0003723
Lal4g0758 317 Gene3D - 64 220 IPR012677 -
Lal4g0758 317 Gene3D - 221 316 IPR012677 -
Lal4g0758 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 209 IPR000504 GO:0003723
Lal4g0758 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 234 304 IPR000504 GO:0003723
Lal4g0758 317 MobiDBLite consensus disorder prediction 95 137 - -
Lal4g0758 317 SMART rrm1_1 233 306 IPR000504 GO:0003723
Lal4g0758 317 SMART rrm1_1 139 212 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0758 Lal-Chr4 6415533 6418581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0758 140 314 Eukaryotic Initiation Factors Gene Family AT3G16380 36.702 6.95e-23 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0758 - - adu:107478884 369.007