Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0752 ATGGATACTTCGAAGACTAATAACCCCTTTCGTATCACCAGAGTCTTACCCGAACCTGACCTTTACCTACACACATCTCGCGGAAAACCTATTCCGGTGCACGCAATCGTTTTGGCTTCAGCGTCACCAGTTCTGGAAAATATGATAATGTCCAACAGAACCGTTAAAATCCAAGGCGTTCCATACGACGCAGTCACAGCCTTCGTGAGCTTTCTCTATACCTCCAGGTGCACGGAGGAGGAGATGGAGAAGTACGGAATGCATCTTCTTGCATTGTCGCACGTGTATTTGGTGCCGGAATTAAAACGAAGGTGCATCAAGGGTATGAGTCAACGTGTTAATACAGAGAATGTGGTGGATGTATTGCAATTAGCGAAGATGTGCGATGCACCGGATCTTTATGTGAAGTGTATTAAGCTTCTCACGGGTAATTTCAAAGAGGTGGAGAAAACAGAGGGTTGGAGATTCTTGCAGCACCATGACCCAAGGCTCGAACTTGACATTCTTCGCTTGATGGATGAACACGAATCGAGGAAGAAGAAATGTAGGAAACAAAGGGAGGAGGAAGGGTTATATATGCAACTGAGTGAGGCAATGGATTGTTTGGAACACATTTGCACAGAGGGATGCACCGATGTGGGGCCTTATGATATGGAGCTTAGCAAAGAAAAGAGAAAGCCTTGTTCCATGTTTGACACATGTCAACCTATTCAAGTGTTGATTCGTCATTTCGCCACGTGTAAGAAGAGGGTCAATGGAGGATGCTTGAGGTGTAAGGGCATGTGGCAGCTCTTTAGACTCCACTCTTTCATTTGCCAACATGATTCTTGCAAGGTTCCTCTATGCAGGCAAATTCAATTGAAAATGCAGCAAGAGAACAAGAAAGTTGATGCAAAGTGGAAACTACTAGCGAGGAAGGTGGCATCGGTCAAAGCCATGTCTTCCTTGTCAGTGCCAAAGAGGAAGCGAAATGAGGAAATTAGAGACACCATAAACAATTCTGGGATCAGAAATTTCATATTAATATAA 1029 0.4431 MDTSKTNNPFRITRVLPEPDLYLHTSRGKPIPVHAIVLASASPVLENMIMSNRTVKIQGVPYDAVTAFVSFLYTSRCTEEEMEKYGMHLLALSHVYLVPELKRRCIKGMSQRVNTENVVDVLQLAKMCDAPDLYVKCIKLLTGNFKEVEKTEGWRFLQHHDPRLELDILRLMDEHESRKKKCRKQREEEGLYMQLSEAMDCLEHICTEGCTDVGPYDMELSKEKRKPCSMFDTCQPIQVLIRHFATCKKRVNGGCLRCKGMWQLFRLHSFICQHDSCKVPLCRQIQLKMQQENKKVDAKWKLLARKVASVKAMSSLSVPKRKRNEEIRDTINNSGIRNFILI 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0752 342 PANTHER BTB/POZ AND TAZ DOMAIN PROTEIN 8 340 - -
Lal4g0752 342 Pfam BTB/POZ domain 20 110 IPR000210 GO:0005515
Lal4g0752 342 SMART BTB_4 19 113 IPR000210 GO:0005515
Lal4g0752 342 ProSiteProfiles BTB domain profile. 19 81 IPR000210 GO:0005515
Lal4g0752 342 Gene3D TAZ domain 187 310 IPR035898 -
Lal4g0752 342 Gene3D Potassium Channel Kv1.1; Chain A 17 113 IPR011333 -
Lal4g0752 342 Gene3D - 114 186 - -
Lal4g0752 342 SUPERFAMILY TAZ domain 187 286 IPR035898 -
Lal4g0752 342 Pfam TAZ zinc finger 196 282 IPR000197 -
Lal4g0752 342 SUPERFAMILY POZ domain 20 142 IPR011333 -
Lal4g0752 342 CDD BACK 114 157 - -
Lal4g0752 342 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 8 340 IPR044513 -
Lal4g0752 342 SMART TAZ_2 189 283 IPR000197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0752 Lal-Chr4 6348046 6351906 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Lal4g0752 BTB 2.5e-12 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0752 - - cam:101496955 468.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0752 4 6348046 6351906 Lal4g0752 4 6348046 6351906 ECH
Lal14g1481 14 15811419 15815505 Lal4g0752 4 6348046 6351906 PCT
Lal19g1041 19 14229098 14232981 Lal4g0752 4 6348046 6351906 PCT
Lal4g0752 4 6348046 6351906 Lal14g1481 14 15811419 15815505 PCT
Lal4g0752 4 6348046 6351906 Lal19g1041 19 14229098 14232981 PCT