Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0750 ATGACAAACATTACACTTTATTTACTTTTCTTGCTCTTTTCCCTTCTCACACCAACACTCATTTCCTCTTCATCTCTTCAAAACTCTGAATTGATAGTAGGAGAGGTAAACAGGAAAGTCAATGCCTCTACTACTAGAAGAAACTTGGGGTACCTCTCATGTGGAAGTGGAAATCCCATTGATGATTGTTGGAGATGTGACCCAAATTGGGAGAATAATAGGCAAAGGCTAGCCGAGTGTGCAATTGGGTTCGGCAAGAATGCCATTGGAGGTAGAGATGGCAAGATATATGTGGTGGACAACGCGGAAAACGACGATCCGGTGAACCCTATTCCGGGCACCCTACGTCACGCCGTGATCCAAGATGAGCCATTGTGGATAATTTTTGCGAGAGACATGGTGATCCAATTGAAAGAAGAGTTAATTATGAACTCATTCAAGACAATTGATGGAAGAGGTGCAAGTGTTCACATTTCGGGTGGTCCATGCATAACAATACAATATGTGACAAATGTTATCATACATGGTATACATATACATGATTGTAAGCAAGGTGGGAATGCTATGGTGAGGGACTCCCCACGGCACTATGGGTGGAGGACCGTATCGGACGGTGATGGTGTATCCATTTTTGGAGGAAGTCATGTTTGGGTGGATCATTGCTCATTGTCTAATTGCATTGATGGTTTGATCGATGCAATTCATGGGTCTACTGCTATTACCATATCCAATAATTATATGACTCACCATGATAAGGTTATGTTGTTGAGTCATAATGATGCTTATACTCAAGACAAGAACATGCAAGTTACAATAGCTTTTAACCACTTTGGTGAAGGCCTTGTTCAAAGAATGCCAAGGTGTAGGCATGGATATTTTCATGTGGTGAACAATGACTACACCCACTGGGAAATGTATGCCATTGGAGGAAGTGCTAACCCAACCATCAATAGCCAAGGCAACAGATTTGTTGCACCCGATGACAGATTCAGCAAAGAGGTGACAAAACATGAAGATGCATCAGAGGATGAATGGAAGGAATGGAACTGGAGATCAGAAGGGGACATGCTGTTAAACGGTGCGTTTTTTACATCAACTGGTGCTGGAGCCTCCTCTAGTTATTCAAGGGCTTCAAGCTTAGGTGCAAGACCATCTTCCCTTGTTGCTTCTATAACTACAAATGCTGGTGCACTTAACTGCAACAAAGGTTCTCCTTGCTAG 1221 0.4267 MTNITLYLLFLLFSLLTPTLISSSSLQNSELIVGEVNRKVNASTTRRNLGYLSCGSGNPIDDCWRCDPNWENNRQRLAECAIGFGKNAIGGRDGKIYVVDNAENDDPVNPIPGTLRHAVIQDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHISGGPCITIQYVTNVIIHGIHIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCIDGLIDAIHGSTAITISNNYMTHHDKVMLLSHNDAYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKHEDASEDEWKEWNWRSEGDMLLNGAFFTSTGAGASSSYSRASSLGARPSSLVASITTNAGALNCNKGSPC 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0750 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Lal4g0750 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Lal4g0750 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Lal4g0750 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Lal4g0750 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Lal4g0750 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Lal4g0750 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Lal4g0750 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Lal4g0750 406 PANTHER PECTATE LYASE 5 403 - -
Lal4g0750 406 SUPERFAMILY Pectin lyase-like 34 401 IPR011050 -
Lal4g0750 406 SMART amb_all 132 329 IPR002022 -
Lal4g0750 406 Gene3D - 57 399 IPR012334 -
Lal4g0750 406 PANTHER PECTATE LYASE 18-RELATED 5 403 IPR045032 GO:0030570
Lal4g0750 406 Pfam Pectate lyase 142 323 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0750 Lal-Chr4 6283401 6287404 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0750 7 406 Polysaccharide Lyase AT5G63180 79.602 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0750 K01728 - gmx:100779940 705.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0750 4 6283401 6287404 Lal4g0750 4 6283401 6287404 ECH
Lal14g1480 14 15806079 15808500 Lal4g0750 4 6283401 6287404 PCT
Lal19g1040 19 14219175 14221662 Lal4g0750 4 6283401 6287404 PCT
Lal4g0750 4 6283401 6287404 Lal14g1480 14 15806079 15808500 PCT
Lal4g0750 4 6283401 6287404 Lal19g1040 19 14219175 14221662 PCT