Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0731 ATGGCTGCTTATACTTCCATCTCTCTTTGTTCTTATAGTCTCTGTTTCCAACCAAAGCTAACTAGGCTTCCCGTTTCTTGCTCCGTTGCTTCTTCTCCGCCCCGAGGTACTGATGGATCTAATTCTAAAGTACGCCATAAAAGAATGAGAAAAATAGAAGGTCCTCGAAAAAGCATGGAAGACTCTGTTCAGCGCAAGATGGAGCAATTTTATGAAGGATCTGATGGGCCACCCCTCCGTGTTCTTCCTATTGGGGGGTTGGGTGAAATTGGAATGAATTGCATGCTTGTTGGTAACCATGACCGCTATATCCTCATTGATGCTGGTATCATGTTTCCAGACTTTGATGAACTTGGAGTTCAAAAGATCATACCTGATACAACATTTATAAGAAAATGGAGCCACAAAATTGAAGCACTTATTATAACACATGGTCACGAAGACCATATTGGTGCTTTGCCCTGGGTCATCCCTGCATTGGATTCGAATACACCAATTTTTGCATCTTCCTTTACTATGGAGGAGCATGGTATTTTTATTCCATCTAGACTGAAAATATTTAGAACAAGGAAGAAGTTTACAGCTGGTCCATTTGAGATAGAACCTATCCGGGTGACTCATTCTATTCCTGATTGTAATGGATTAGTTCTTCGCTGTTCTGATGGCACTATTCTTCACACTGGGGATTGGAAGATTGATGAGTCACCACTAGATGGGAATGTTTTTGATCGTGAGGCTTTAGAAGAACTCTCTAAAGAAGGAGTAACACTGATGATGAGTGACTCAACAAATGTACTTTCACCTGGAAGGACAACCAGTGAATCTTCTGTGGCAGAAGCATTATTGAGGCATATTTCTGCTTCTAAGGGAAGGATAATAACAACCCAATTTGCATCAAATATACATCGGCTTGGAAGTGTGAAAGCTGCTGCTGATTTAACTGGCAGAAAGTTGGTATTTGTTGGCATGTCTTTAAGGACGTATTTAGAAGCAGCTTGGAAGGATGGAAAGGCTCCCATTGATCCATCGACTCTGGTAAAAGCAGAGGACATTGATGCTTATGCTCCAAAGGATCTGCTAATTGTAACAACAGGCTCTCAAGCAGAGCCACGTGCTGCCTTGAATCTTGCATCCTACGGAAGTAGCCATGCTTTCAAACTATCCAAAGAAGATGTTCTTTTGTATTCAGCAAAGGTTATCCCTGGAAATGAGTCTCGTGTAATGCAAATGCTAAACCGCATATCAGAGATTGGATCAACTATAGTTATGGGGAAAAACGAAGGTCTGCACACATCTGGTCATGCATATCGTGGAGAATTGGAGGAAGTACTCAGAATAGTGAAGCCACAACATTTTCTTCCCATACATGGAGAACTCTTGTTCTTGAAGGAGCATGAATTACTTGGAAAGTCAACTGGCATTCGGCACACTGCTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCACACTTGAGAAATAGAAGAGTCCTCTCTAATGGTTTCATTTCCCTTGGAAAAGAGAATTTTCAGTTGAAATATAGTGATGGCGACAGAGCATTTGGTACATCAAGTGAACTCTGCATTGATGAAAGATTGAGAGTTGCATTAGATGGCATCATTGTAGTTAGCATGGAAATATTTCGCCCACAAAATGTAGATAGTTTGGCTGAAAACACCTTAAAAGGAAAGATAAGAATTACCACAAGATGCTTATGGCTTGACAAAGGGAAGTTGTTGGATGCACTCCATAAAGCTGCTAATGCAGCTCTTTCAAGTTGCCCAGCAAATTGTCCACTGACTCACATGGAAAGAATTGTGTCTGAGATGTTGAGGAAGATGGTGAGGAAGTACAGTGGTAAAAGACCAGAAGTTATTGCTGTTGCCATAGAAAATCCTGAAGCTGTTCTTGCAGACGAGATAAACACAAAATTGTCTGGCAAGTTCCATGTGGGTCCTGGTATATCAACATTACGAAAAGCAGTGGATGGACATGGGAAGTCAAATCAGTATACCAGAATGCAAATAAGAGATTGCAATGGACCTCTACAGTGGATACCTAAATTGACTATTTTATACTATAGTCGTGTAGATGATGGCATTAATGTTGAAGAGAAGGATGCTACTACTTCAAGTAGAGCTGAGGATGGTTTACTCGATTCAGAGGTTTCAGATGACTTTTTGAAAACATTCCTTGCTTCCTCACCAGTTGAAAAGTCAATTAAAGCTAACAACGGTTATGTTTCACGAAAGGAGCACGAGTCCAATCTGAAGGAAGATTATTCTGAAGAGACTGATGAACCCAGGTCTGAAGAGAAGTCTAATTCTGAACCCAAGTCTGAAGAGAAGTCTAATTCGGAACCCAAGTCTGAAGAGACATCTAATTCAGAACTCAAGTCTTCAAAATCAGTGAAGAGAAATAAATGGAAACCTGAGGAAATTAAGAAGGTGATTGATATGCGTGAAGAATTACATGACAGATTTCAAATCGTTAAGGGAAGGATGGCTCTCTGGCAGGAGATATCTCAGAACTTGTCGGCTGATGGGATCAGCAGAAGTCCTGGACAGTGCAAATCTCTATGGACATCTTTGGTACTAAAATATGAGAGTAAAAACGTAGGTGAAAAGGTCATGGATAAGGGTCTGCAAAATGTGTCCCATCCCACTAATCTTCCCAGTCCCAAAGCTTGTTTTGATGAGTTTGAGTTTTATAAATTAGACCTGGAGCTGAAGAATGAGAAGGGTAGCAAGAAAGGATGGCAATATTTTGAGGACATTGAAAGGATAATGTCTAATAATGATGCACTGGCAACAAAATAA 2817 0.405 MAAYTSISLCSYSLCFQPKLTRLPVSCSVASSPPRGTDGSNSKVRHKRMRKIEGPRKSMEDSVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNHDRYILIDAGIMFPDFDELGVQKIIPDTTFIRKWSHKIEALIITHGHEDHIGALPWVIPALDSNTPIFASSFTMEEHGIFIPSRLKIFRTRKKFTAGPFEIEPIRVTHSIPDCNGLVLRCSDGTILHTGDWKIDESPLDGNVFDREALEELSKEGVTLMMSDSTNVLSPGRTTSESSVAEALLRHISASKGRIITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLEAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHAFKLSKEDVLLYSAKVIPGNESRVMQMLNRISEIGSTIVMGKNEGLHTSGHAYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTAVIKNGEMLGVSHLRNRRVLSNGFISLGKENFQLKYSDGDRAFGTSSELCIDERLRVALDGIIVVSMEIFRPQNVDSLAENTLKGKIRITTRCLWLDKGKLLDALHKAANAALSSCPANCPLTHMERIVSEMLRKMVRKYSGKRPEVIAVAIENPEAVLADEINTKLSGKFHVGPGISTLRKAVDGHGKSNQYTRMQIRDCNGPLQWIPKLTILYYSRVDDGINVEEKDATTSSRAEDGLLDSEVSDDFLKTFLASSPVEKSIKANNGYVSRKEHESNLKEDYSEETDEPRSEEKSNSEPKSEEKSNSEPKSEETSNSELKSSKSVKRNKWKPEEIKKVIDMREELHDRFQIVKGRMALWQEISQNLSADGISRSPGQCKSLWTSLVLKYESKNVGEKVMDKGLQNVSHPTNLPSPKACFDEFEFYKLDLELKNEKGSKKGWQYFEDIERIMSNNDALATK 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0731 938 SUPERFAMILY Metallo-hydrolase/oxidoreductase 79 486 IPR036866 -
Lal4g0731 938 CDD RNaseJ_MBL-fold 82 486 - -
Lal4g0731 938 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 429 466 IPR011108 -
Lal4g0731 938 ProSiteProfiles Myb-like domain profile. 800 864 IPR001005 -
Lal4g0731 938 MobiDBLite consensus disorder prediction 744 804 - -
Lal4g0731 938 PANTHER RIBONUCLEASE J 784 879 - -
Lal4g0731 938 PANTHER RIBONUCLEASE J 1 783 - -
Lal4g0731 938 SMART Lactamase_B_5a 91 281 IPR001279 -
Lal4g0731 938 Pfam Metallo-beta-lactamase superfamily 92 229 IPR001279 -
Lal4g0731 938 Gene3D - 273 423 IPR042173 -
Lal4g0731 938 Gene3D - 808 869 - -
Lal4g0731 938 MobiDBLite consensus disorder prediction 743 804 - -
Lal4g0731 938 PANTHER RNA-METABOLISING METALLO-BETA-LACTAMASE 1 783 - -
Lal4g0731 938 PANTHER RNA-METABOLISING METALLO-BETA-LACTAMASE 784 879 - -
Lal4g0731 938 Pfam Myb/SANT-like DNA-binding domain 805 875 IPR044822 -
Lal4g0731 938 CDD GT1 806 868 - -
Lal4g0731 938 MobiDBLite consensus disorder prediction 27 59 - -
Lal4g0731 938 Gene3D - 83 488 IPR036866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0731 Lal-Chr4 6081215 6093820 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0731 807 869 Trihelix Transcription Factor Family AT5G01380 36.508 5.54e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lal4g0731 Lactamase_B 7.4e-09 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0731 - - lang:109326906 1589.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0731 4 6081215 6093820 Lal4g0731 4 6081215 6093820 ECH
Lal21g0773 21 6511679 6528974 Lal4g0731 4 6081215 6093820 LSH