Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0729 ATGGTTTCAACCAGTAGCAACAATGATTCTCTCTCCTCCAACAACACTAAACGACCTTCTTCCTCTTCCGATGATAAACCTTCTTCTCCTTCTCCTTCCTCAAAACGACAAAAGGTTGATAATGACGGCGCCGAGTCCGAGAAACCGGTGCCGGCGGCGGAGAATTCCAAGGATTTGGGAACTCTTGAGGCTCCTGCTGATCCCGGCGATACTCAGGTCACTTCAGATGGCGGTGCTGATGGTAAAGGTGACGTTGAACCTGACGTGGATGTGACGGCACCACCGATTGCTGAGGGGTTTTTGCCAACAATTATGGTGGCTGAAAAGCCAAGACCTTCTTTCTCTTCATGGAGCATGTATCAGAAGCAGAATCCAAAAACTGATTGTTCAGTTCCCTGGTGCAGGCTTTTAACTCAGTCTTCACAGAATCCAAATGTTGCCATTTGCATGCTGAAATTTATGATTGGTTCGAGTAGAAATTGCAACTTTCCGTTGAAGGATCAGACAATAAGTGGAATTTTATGCAAGATCAAACATACCGAGTGTGAGGGAAATGCTGTAGCTGTGCTACAAAGTACGGGTAGCAAAGGATCAGTGCTAGTAAATGGGATGCTTGTCAAGAAGAATACTAGCTGTGTGCTTAACTCGGGTGACGAGGTGGTTTTTGGATCGCTGGGGAATCATTCTTATCAACTAAATACTGAATTTGCTGTTAAGGGTGCAGAAGTTCAAAATTATGCTGGGAAATTTGTTCAGATTTATAGGAGAAATAGAGACCCTTCAGCTTTGGATGGGGCTTCCATCTTGGCTTCTCTTTCTATCTTCAGACATGATCTTACAAAATTGAAGTCTCCATCTCAGACTTCCAATAAACCTCACCATGTTACCGACGTTTCTAATCATTCTGTTTTCATTGATGGTACAGAAGCTGAGCTTGATGGTCTCAAAGGCAACTCAGCTCCAAATGTAGGGACTAATAAGGCTTCTGATGTTGGAGCAAGCTACAAAAACTCTCCTATGGATTGTGATCCATATGATGCGGGCACAGAGGCAGGCAATGTAAAACTCTCTGGGGTGAATGATTTCCTAACGCCTTACTTCAGGTTCCTAGCTGGATCTAATTTTAAATTGAAATTGAGCAAAAGTATCTGTGAACAGGTGTTAGAAGAAAGAAATGGGACGAGGGGGGCACAAGCTGCAACAACTTTGGGTAAGTCTGTGCGCTGTGCAGTTTTTAAGGCAGATGTTGAAGCTGCAATTCTGGATGGAAAAGAAATTGATGTGTCCTTCGACAACTTCCCATACTATTTAAGTGAGAATACAAAAAAGGTCTTGGTTGCAGCATGCTTTATAAACCTAAAGCATAAAGAACATGCAAAGTATACCACAGATCTTACAACCATAAACCCTCGTATTCTACTCTCAGGACCTGCAGGATCAGAAATATATCAGGAGGTGCTGGTGAAAGCACTAGCAAATTACTTTGGAGCGAAATTGCTCATATTTGATAGCCATTTGCTTTTGGGTGGTTTATCTTCAAAGGAAGCTGAGCTGCTCAAAGATGGATTCAATGCTGAAAAATCATGCAGTTTCTCGAAGCAAACTCCTACAGCCACAGACATGGCTAGCATGGATCCATCAACTAGAGACACAGATACACCTAGCTCTTCAAATGCACCTACTCCACATGGGCTTGAGTCTCAACCTAAGTTAGAAATTGATAGTGTGCCACCTTCCTCTGGGACAGCTAAAAATTGTTTGTTTAAACTAGGTGATAAGGTAAAATATAGCTTATCATCTTCTTCAAGGGGTCCTCCTAATGGATGTCGTGGAAAGGTTGTCTTGGTTTTTGAGGATAATCCCTTGTCAAAAATTGGTGTAAGATTTGATAAACCCGTACCTGATGGAGTTGATCTTGGAGGTGCCTGTGAGGGTGGTCAAGGATTTTTCTGCAATGTTACTGATCTTTGCTTGGAAAATGACGGCGTTGATGAACTGGACAAAATACTTATTACTGCATTGTTTGAGATTGTGTTTAGTGAAAGCAGAAGTGCACCTCTCATTTTGTTCATGAAAGATGCAGAGAAGTCTATAATAGGAAATGGTGATCCATTTTCATTTAAAAGTAAGCTTGGAAAGCTTCCAGACAATGTTGTGGTCATAGGTTCACACACTCACGATGACAGTCGGAAGGAGAAGTCGCATCCTGGGGGTTTGATTTTTACAAAGTTCGGCAGCAATCAGACTGCCCTTCTGGACTTGGCTTTCCCTGATGGTTTTGGAAGATTGCAAGAAAGGGGAAAGGAAGTCCCAAAGCCAAACAAAACTTTGACTAAGCTTTTTCCAAATAAAGTAACAATTCTCAAGCCACAGGATGAGGGGCTTTTAGCATCTTGGAAACAGCAACTGAATCGAGATGTTGAGACTCTCAAAATCAATGCAAATTTGCACCATTTGCGCACAGTTTTAAGCCGTTGTGGAATGGAATGTGAAGGACTTGAGACCTTGTGCATTAAGGATCAGACACTTACAAATGAAAATGTAGAGAAGATTGTTGGCTGGGCTTTAAGCCACCACCTCATGCAGAGTTCTGAAGTTAATCATGATGCAAAGCTTGTGTTGTCTTGTGAAAGTATCCAGTATGGAATTGGGATTTTACAGGCTATCCAGAATGAGTCAAAGAGCACGAAGCAGTCTCTTAAGGATGTTGTAACAGAAAACGAGTTTGAAAAGAGTATTTTGGCTGATGTTATTCCACCTAATGACATTGGTGTTACTTTTGATGATATTGGAGCTCTTGAAAATGTCAAGGATACAATGAAAGAATTGGTTATGCTTCCTTTACAGAGGCCTGAGCTTTTTTGCAAGGGGCAATTAACCAAGCCATGCAAGGGTATCCTATTATTTGGACCCCCTGGAACTGGTAAGACAATGCTTGCGAAAGCCGTTGCTACTGAAGCAGGTGCAAACTTCATTGATATTTCCATGTCAAGCATTACGTCTAAGTGGTTTGGTGAGGGTGAGAAATATGTAAAAGCTGTTTTCTCCGTGGCGAGTAAAATTGCTCCTAGTGTTATATTTGTCGACGAAGTTGATAGCATGTTGGGCCGGAGGGAAAATACTGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAACTGGGATGGCTTACGTACAAAGGAAACTGAGCGAGTTCTTGTGCTTGCAGCCACAAATAGGCCTTATGACCTTGATGAGGCTGTCATTCGGAGGTTGCCGCGGAGATTAATGGTAAATTTGCCTGATGCTCCAAATAGAGCAAAAATATTAAAAGTTATACTGGCAAAAGAGGACTTGTCTTCTGATGTTGACCTGGATGCAATTGCAAGTATGACTGATGGATATTCTGGAAGTGATCTTAAGAATTTTTGTGTAACTGCTGCACATCGTCCCATTAAAGAGATATTAGAAAAAGAAAAGAAGGAACAAGCTGCTGCTCTAGTGGAAGGTAGACCTGCTCCAGCATTAAGTGGAAGTGCAGATATTCGATCTTTGAACATGGAAGACTTTAGACATGCTCATCAACAGGTATGTGCAAGTGTTTCATCCGAATCCGTAAATATGACCGAGCTTTTACAATGGAATGAACTATATGGTGAAGGTGGTTCAAGAAGAAAAAGCTCACCCAGCTATTTCATGTGA 3693 0.4194 MVSTSSNNDSLSSNNTKRPSSSSDDKPSSPSPSSKRQKVDNDGAESEKPVPAAENSKDLGTLEAPADPGDTQVTSDGGADGKGDVEPDVDVTAPPIAEGFLPTIMVAEKPRPSFSSWSMYQKQNPKTDCSVPWCRLLTQSSQNPNVAICMLKFMIGSSRNCNFPLKDQTISGILCKIKHTECEGNAVAVLQSTGSKGSVLVNGMLVKKNTSCVLNSGDEVVFGSLGNHSYQLNTEFAVKGAEVQNYAGKFVQIYRRNRDPSALDGASILASLSIFRHDLTKLKSPSQTSNKPHHVTDVSNHSVFIDGTEAELDGLKGNSAPNVGTNKASDVGASYKNSPMDCDPYDAGTEAGNVKLSGVNDFLTPYFRFLAGSNFKLKLSKSICEQVLEERNGTRGAQAATTLGKSVRCAVFKADVEAAILDGKEIDVSFDNFPYYLSENTKKVLVAACFINLKHKEHAKYTTDLTTINPRILLSGPAGSEIYQEVLVKALANYFGAKLLIFDSHLLLGGLSSKEAELLKDGFNAEKSCSFSKQTPTATDMASMDPSTRDTDTPSSSNAPTPHGLESQPKLEIDSVPPSSGTAKNCLFKLGDKVKYSLSSSSRGPPNGCRGKVVLVFEDNPLSKIGVRFDKPVPDGVDLGGACEGGQGFFCNVTDLCLENDGVDELDKILITALFEIVFSESRSAPLILFMKDAEKSIIGNGDPFSFKSKLGKLPDNVVVIGSHTHDDSRKEKSHPGGLIFTKFGSNQTALLDLAFPDGFGRLQERGKEVPKPNKTLTKLFPNKVTILKPQDEGLLASWKQQLNRDVETLKINANLHHLRTVLSRCGMECEGLETLCIKDQTLTNENVEKIVGWALSHHLMQSSEVNHDAKLVLSCESIQYGIGILQAIQNESKSTKQSLKDVVTENEFEKSILADVIPPNDIGVTFDDIGALENVKDTMKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIDISMSSITSKWFGEGEKYVKAVFSVASKIAPSVIFVDEVDSMLGRRENTGEHEAMRKMKNEFMVNWDGLRTKETERVLVLAATNRPYDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSSDVDLDAIASMTDGYSGSDLKNFCVTAAHRPIKEILEKEKKEQAAALVEGRPAPALSGSADIRSLNMEDFRHAHQQVCASVSSESVNMTELLQWNELYGEGGSRRKSSPSYFM 1230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0729 1230 Pfam AAA+ lid domain 1119 1154 IPR041569 -
Lal4g0729 1230 SUPERFAMILY SMAD/FHA domain 133 225 IPR008984 GO:0005515
Lal4g0729 1230 SMART AAA_5 962 1099 IPR003593 -
Lal4g0729 1230 ProSitePatterns AAA-protein family signature. 1069 1088 IPR003960 GO:0005524|GO:0016887
Lal4g0729 1230 Pfam FHA domain 154 223 IPR000253 GO:0005515
Lal4g0729 1230 Gene3D - 924 1205 IPR027417 -
Lal4g0729 1230 MobiDBLite consensus disorder prediction 1 37 - -
Lal4g0729 1230 CDD AAA 964 1097 - -
Lal4g0729 1230 Gene3D - 132 237 - -
Lal4g0729 1230 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 925 1205 IPR027417 -
Lal4g0729 1230 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 90 361 - -
Lal4g0729 1230 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 386 1230 - -
Lal4g0729 1230 Pfam ATPase family associated with various cellular activities (AAA) 966 1095 IPR003959 GO:0005524|GO:0016887
Lal4g0729 1230 MobiDBLite consensus disorder prediction 534 578 - -
Lal4g0729 1230 Gene3D - 1098 1192 - -
Lal4g0729 1230 CDD FHA 155 234 IPR000253 GO:0005515
Lal4g0729 1230 MobiDBLite consensus disorder prediction 1 90 - -
Lal4g0729 1230 MobiDBLite consensus disorder prediction 534 564 - -
Lal4g0729 1230 Gene3D - 574 662 - -
Lal4g0729 1230 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 90 361 - -
Lal4g0729 1230 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 386 1230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0729 Lal-Chr4 6057220 6072105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0729 925 1177 Calmodulin-binding Proteins AT3G56690 40.385 2.58e-42 166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0729 4 6057220 6072105 Lal4g0729 4 6057220 6072105 ECH
Lal17g0855 17 6471076 6482922 Lal4g0729 4 6057220 6072105 LSH
Lal14g1464 14 15713006 15723247 Lal4g0729 4 6057220 6072105 PCT
Lal7g0882 7 15347215 15359360 Lal4g0729 4 6057220 6072105 PCT
Lal4g0729 4 6057220 6072105 Lal14g1464 14 15713006 15723247 PCT
Lal4g0729 4 6057220 6072105 Lal7g0882 7 15347215 15359360 PCT