Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0693 ATGAAAGATTCATCATCCCCAGACGCAGACCCAATCACAGTTTCACTCAACCTCTTATCTTCCCTCCTTGATCATGAAATCCCCACCGTCCATCACTTCAAAGGAAAGTGGTCCCTCGCCCGAGTCAAACTCACTCTCCTCCAAACTCATCTAACCGATTTCTCAACCGATTTTCCTAACTCATCTCACCCTCTCTCCCTTGATCTCTTTCTCTCTATCTCCAACACTCTACACGACGCCGTTTCACTCGTCCATCACTCTCAGTCACTTAACCTCCAAAACGGCAAGCTCAAAACTCAAAACGACCTCGACTCACTCCTCTCCAAACTCCATTGCCACGTCACCGACTGCGACATTCTCTTTCGCAGTGGAGTCCTGAATGAAAACCAAAACGCTGCCGTTTCTACTTCTAAAAATGAGACAGTGAGATCCGAATCAAGAAACCTTATAACTCGGTTACAAATCGGGTCGACTGAGTCAAGAAACTCGGCGATGGACTCGTTACTCACCCTTCTAAATGAAGATGATAAGAACGTAACAATCGCGGTGGCGCAGGGTATTGTTCCCGTGCTCGTGCGTCTACTTGATTATTCCCCTTCCTCTTCAGAGATGAAAGAGAAAACCGTTGCTGCGGTTTCTAGGGTTTCTACCGTTGACTCAATCAAGAACGTTTTGATCGCGGAGGGTTTGTTGCTTCTCAATCACCTTCTTCGGGTTCTTGATTCCGGTACCGGATTCGGTATCGAAAAAGCTTGCATTGCGCTTCAGGCACTGAGTTTTTCCAAAGAGAACGCCAGAGCGATTGGTTCACGCGGCGGAATCTCGTCACTGTTGGAGATTTGCCAGGCTGGGACTCCTGGTTCGCAAGCTTCCGCCGCCGGAGTTCTGAGGAACCTCGCTGCGTTCGAAGAAATTCGAGAGAATCTCGTTGAGGAGAATGCAGTTGTTGTTCTTTTAGGCCTTGCTTCTTCTGGCACTTCTTTAGCGCAAGAGAATGCAATCGGTTGTTTGTCTAGTTTGATTTCGGAAACAGAGAGTTTGAGGGTTTTGGTTGTTAAGGAAGGTGGAATAGAGATTTTGAAGAATTTTTGGGACTCTGCTGGTTTAACTAACAAGGGTCTCGAAGTCGCGGTTGAGATTTTGAGAGTCCTGGCTTTAAGTGCACCTATAGCTGAGGTTCTTGTTTCCGAAGGATTCGTGGCGAGGCTAGTTGGTGTGCTGAATTGTGGAGTGCTAGCGGTGAGGATTGTGGCGGGGAGAGCTGTGTATGCTTTGGGGTTAAGCGGCAGCACAAAGGCCAGGAAGGAGATGGGAGAGTGTGGCTGCATTGTGCCTTTGATTAAGATGTTGGATGGGAAAGCGGTGGAAGAGAAAGAAGTGGCGGTGATGGCTTTGTCCGTGCTCTTGTCGCACACCGCAAACAGGAGGGTTTTCCGGAAAGATGAGAAGGGTGTAGTGAGTGTAGTTCAGTTATTGAATCCTTCTTTACAGGGTTTGGATAAGAAGTACCCGGTTTCGCTGCTGGGGTTGCTGGTGCATTCCAAGAGTTGTAGGAAGCAAATGGTCGCGGCTGGGGCTTGTGTGTATACTCAGAAGCTTGTTGAGATGGAAATTGAGGGATCGAAGAAACTGTTGGAAACCCTTGGTCGCGGTAAGATATGGGGAGTTTTTGCAAGACCTTAG 1683 0.4819 MKDSSSPDADPITVSLNLLSSLLDHEIPTVHHFKGKWSLARVKLTLLQTHLTDFSTDFPNSSHPLSLDLFLSISNTLHDAVSLVHHSQSLNLQNGKLKTQNDLDSLLSKLHCHVTDCDILFRSGVLNENQNAAVSTSKNETVRSESRNLITRLQIGSTESRNSAMDSLLTLLNEDDKNVTIAVAQGIVPVLVRLLDYSPSSSEMKEKTVAAVSRVSTVDSIKNVLIAEGLLLLNHLLRVLDSGTGFGIEKACIALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQASAAGVLRNLAAFEEIRENLVEENAVVVLLGLASSGTSLAQENAIGCLSSLISETESLRVLVVKEGGIEILKNFWDSAGLTNKGLEVAVEILRVLALSAPIAEVLVSEGFVARLVGVLNCGVLAVRIVAGRAVYALGLSGSTKARKEMGECGCIVPLIKMLDGKAVEEKEVAVMALSVLLSHTANRRVFRKDEKGVVSVVQLLNPSLQGLDKKYPVSLLGLLVHSKSCRKQMVAAGACVYTQKLVEMEIEGSKKLLETLGRGKIWGVFARP 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0693 560 PANTHER ARMADILLO-TYPE FOLD PROTEIN-RELATED 9 558 - -
Lal4g0693 560 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 9 558 - -
Lal4g0693 560 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 186 230 IPR000225 GO:0005515
Lal4g0693 560 Gene3D - 370 547 IPR011989 -
Lal4g0693 560 Gene3D - 135 367 IPR011989 -
Lal4g0693 560 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 272 314 IPR000225 GO:0005515
Lal4g0693 560 SMART arm_5 261 301 IPR000225 GO:0005515
Lal4g0693 560 SMART arm_5 175 217 IPR000225 GO:0005515
Lal4g0693 560 SMART arm_5 430 470 IPR000225 GO:0005515
Lal4g0693 560 SMART arm_5 302 342 IPR000225 GO:0005515
Lal4g0693 560 SMART arm_5 387 427 IPR000225 GO:0005515
Lal4g0693 560 SUPERFAMILY ARM repeat 148 500 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0693 Lal-Chr4 5524341 5526023 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0693 134 415 U-box Gene Family AT2G23140 27.083 2.80e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0693 - - gmx:100807228 759.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0693 4 5524341 5526023 Lal21g0702 21 5610349 5614308 ECH
Lal4g0693 4 5524341 5526023 Lal4g0693 4 5524341 5526023 ECH