Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0687 ATGATGTCTAGAACAAACAGTGTTTCTTGGATGGATCATGACAACAACAACAACAACAACAACAATAACAAGAGAGAAAACCAACACCAAGATTGTGCTGAGTTAGGTTCTATCTGTGGCTTCAAACAAACAATGATGGAGGTTGTTGATGAGGAATGGTACATAGCCAACAATAGTATTCAAAACCACCCTAATGATATGATTAGGGACATGACTTTTTCTCCAAACTTTGCTGACCCTGTAGATAACCTTTTACTCAATCACCATGTCACTGTGGACTCTTCTTCTTCTTGCTCTCCCTCTTCTTCTATGTTCAATAACCTTGACCCTTCACAACTGCACCAGTTTTTTCTCCCTCCCAACAATCCAAAACCAAACACTTTTTCTTCTCTTCTCAACAACAATAACAATAACAATAACAATAACAACCCTTTTGAGATGGGTTGTGAGGTTGGGTTTCTTGAGCCTCAAGCTTCAACTACTTCACCATCAGTGCTAAACAGAACTTCTTCTTCACTATTGGGTTCCTTCAATGACTTGAACTCTAAGAATCCGTTAAGTAACATTCCTAACTTAGGCTCATCAAGCATCATGCAATTGCACCAAAACACAACCAACTTTGCAGGTTTTCAGAACAACTTTGAAGAGGGTTCTGGAGGGAATAATAAGGCACTGTTTCTGAACAGATCCAAGATTTTAAGACCCCTTGAGTCTTTGCCTCCATCTGGAGCACAACCTACTTTGTTTCAGAAGAGAGCAGCACTCAGAAAAAACATGGGATCAGAAAGTGGCATTGGTGTTGTTGGTTCAGTTTTTGGTGAAGGGAGTGATAGGAAGATGATGAAAATGAGTAATAGTGTGGAATTAGATATGGAAGATGGAAGCTTTGATGGGTCTGGATTGAACTATGATTCTGATGATTTGACTGAGAGTAATAATAATAAGGTGGAAGAGAACAATGGTAGGAATGGTGGAAATAGTTCTAATGGGAATAGTACTGTAACTGGTGGTGTTGTGGATCATAAAGGGAAGAAGAAGGGCATGCCTGCTAAGAATTTGATGGCCGAACGCCGCCGACGGAAGAAGCTCAATGATAGACTCTATATGCTGAGGTCTGTTGTTCCAAAGATTAGCAAAATGGACAGGGCTTCAATCCTTGGGGATGCAATTGAATATCTGAAGGAACTTCTGCAAAGGATCAATGACCTTCATAATGAATTGGAGTCCACACCGGGTAGCTCTTCACTCACCCCTGTCTCCTCAACCTTCCATCCATTGACACCGACACTGCCGAGCCGTATTAAAGAAGAACTATGCCCTAGTTCACTGCCAAGTCCCAATGGCCAACCTGCCAGGGTTGAGGTTCGATTGCGCGAAGGAAGAGCTGTCAATATCCACATGTTTTGTTCTCGCAAACCCGGTATCTTGCTCTCAACCATGAGGGCTTTGGATAACATGGGGTTAGACATTCAGCAGGCTGTTATCAGCTGCTTCAATGGATTTGCTATGGATATTTTTAGAGCTGAGCAATGTATAGAAGGTCAAGATGTTCATCCGGAGCAAATCAAAGCAGTACTATTGGATTCAGCTGGCTTCTCTGGCATGATATAG 1611 0.4184 MMSRTNSVSWMDHDNNNNNNNNNKRENQHQDCAELGSICGFKQTMMEVVDEEWYIANNSIQNHPNDMIRDMTFSPNFADPVDNLLLNHHVTVDSSSSCSPSSSMFNNLDPSQLHQFFLPPNNPKPNTFSSLLNNNNNNNNNNNPFEMGCEVGFLEPQASTTSPSVLNRTSSSLLGSFNDLNSKNPLSNIPNLGSSSIMQLHQNTTNFAGFQNNFEEGSGGNNKALFLNRSKILRPLESLPPSGAQPTLFQKRAALRKNMGSESGIGVVGSVFGEGSDRKMMKMSNSVELDMEDGSFDGSGLNYDSDDLTESNNNKVEENNGRNGGNSSNGNSTVTGGVVDHKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPGSSSLTPVSSTFHPLTPTLPSRIKEELCPSSLPSPNGQPARVEVRLREGRAVNIHMFCSRKPGILLSTMRALDNMGLDIQQAVISCFNGFAMDIFRAEQCIEGQDVHPEQIKAVLLDSAGFSGMI 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0687 536 MobiDBLite consensus disorder prediction 302 336 - -
Lal4g0687 536 PANTHER BHLH TRANSCRIPTIONAL FACTOR 104 536 - -
Lal4g0687 536 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 347 396 IPR011598 GO:0046983
Lal4g0687 536 SMART finulus 353 402 IPR011598 GO:0046983
Lal4g0687 536 CDD bHLH_AtAMS_like 350 415 - -
Lal4g0687 536 Pfam Helix-loop-helix DNA-binding domain 354 396 IPR011598 GO:0046983
Lal4g0687 536 MobiDBLite consensus disorder prediction 290 347 - -
Lal4g0687 536 Gene3D - 341 411 IPR036638 GO:0046983
Lal4g0687 536 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 350 414 IPR036638 GO:0046983
Lal4g0687 536 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 104 536 - -
Lal4g0687 536 MobiDBLite consensus disorder prediction 1 26 - -
Lal4g0687 536 CDD ACT_UUR-ACR-like 465 525 - -
Lal4g0687 536 MobiDBLite consensus disorder prediction 1 27 - -
Lal4g0687 536 Coils Coil 386 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0687 Lal-Chr4 5390915 5393979 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0687 48 515 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 51.446 2.30e-123 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal4g0687 HLH 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0687 - - tcc:18605190 556.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0687 4 5390915 5393979 Lal21g0697 21 5537318 5541197 ECH
Lal4g0687 4 5390915 5393979 Lal4g0687 4 5390915 5393979 ECH
Lal21g0697 21 5537318 5541197 Lal4g0687 4 5390915 5393979 LSH
Lal19g1004 19 13911276 13914610 Lal4g0687 4 5390915 5393979 PCT
Lal4g0687 4 5390915 5393979 Lal19g1004 19 13911276 13914610 PCT