Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0686 ATGGAAGCATCAGAGAAAATTAGGAAGGGAAATTGTTTGAGCCATAACAACGACGGTTGTGGTGTTGGTGCGGAGGGACATAACGGTAATTTAACATCATCCACGGCCAGAGATGCAGAAGCTGCACTTTACAGAGAGCTATGGCATGCTTGTGCTGGTCCTCTTGTTACTGTTCCCCGAGAAGGAGAACGTGTCTTTTATTTCCCTCAAGGTCATATAGAGCAGGTGGAGGCATCTACCAATCAGGTTGCAGACCAACATATGCCAGTTTATGATCTCCCTTCTAAGATTCTTTGTCGTGTCATCAATGTGCAGCTGAAGGCGGAGCCAGACACGGATGAGGTTTTTGCCCAATTGACTTTACTTCCAGAGCCAAACCAAGATGAGAATGCTGTTGAGAAAGAGCCTCCACTGCCTCAGCTGGCGCGATTCCACGTTCATTCATTCTGTAAGACTCTGACGGCCTCTGATACCAGTACCCACGGTGGGTTTTCCGTGCTGAGGCGGCATGCCGATGAATGTCTTCCACCACTGGACTTGTCAAAGCAACCACCCACCCAAGAATTGGTGGCTAAGGATTTGAATGGAAATGAGTGGCGATTTAGACATATCTTTCGAGGTCAACCCCGTAGACACTTGCTACAAAGTGGTTGGAGCGTTTTTGTCAGCTCCAAGAGGCTAGTTGCTGGGGATGCATTTATATTTCTAAGAGGTGAGAATGGGGAACTTCGAGTTGGTGTCAGGCGAGCAATGAAACATCAGGGTAATGTTCCATCTTCAGTTATCTCTAGCCACAGCATGCATCTTGGCGTCCTTGCTACTGCTTGGCATGCCATCTTGACTGGAACCATATTCACTGTTTATTACAAGCCCAGGACCAGTCCTGCCGAATTTATTGTACCATACAATCAGTACATGGAATCTCTAAAAAATAGTTATACCATCGGGATGCGGTTCAAAATGAGGTTTGAAGGTGAAGAGGCTCCGGAGCAGAGGTTTACTGGTACAGTTGTTGGAGTAGAAGATTCTGACTCAAAAAGGTGGCCAGATTCCAAATGGAGAAGCCTCAAGGTGGTGAGATGGGATGAAACATCTAACATACCACGTCCTGGTAGAGTTTCACCTTGGAAAGTCGAGCCTGCTCTTGCTCCTCCAGCTCTGAATCCTCTTCCAATGCCCAGGCCTAAAAAGCCTCGGTCTAATGCAATTCCATCATCCCCCGATTCGTCCGTTCTTACTCGAGAAGCATCATCTAAAGTAAGTTTAGACCCTTTACCAACAAATGGATTCCCAAGAGTCTTGCAAAGTAAAAAACTCTCGACCTTGAGAGGCAATTTTGCAGAAAGCAACAAGTCTGATACTGCTGTTAAGTGTGTCGCTTGGCCACCAGTGGAAGATGAAAAGATTGATGTTTCTACTTCTAGAAGTTATGGGTCAGAGAACTGGATGTCAATGGGGAGGCATGAGCCAACCTATTCAGATCTTCTGTCAGGCTTTGGTGCTGGTGGAGATCCTTCCCATCCATCCTTGGTTGATCAAACTGGCCATGTAGCTTATCCTGCAAGTAATCATTCTTTGGATCATGAATCCAAACTTCATGTGCATCATCCATGGTCTGTAATGCCTTCTAGTCTAACACTAAACCTCATGGACTCTACTTTGAAAGAGGCTGCAAATGTTGATACAACTTACCAAGCTCGAGGGAATTTGAGGTATAGTGCATTTGGTGAATTCCCCATGTTTCGCCGCCATCATAAAGTTGAGCATCTGCATGGAAACTTAATGCCACCCCCACCTTCAACTCAATATGAGAGTCCTCATTCAGGAGAGCTTATGTCTAACCCAATGTCTACAAAAACTAGTGAGGCTATGACACTTAAAGATGGTGACTGTAAGCTATTTGGCATCTCACTTATCAGTAGCCCCATTGCACAAGAGCCTTCTGCATTAGAAAGAAATGTGACAAGTGAGCCTGGTGGTCAAATGTATCTTACATCACACCAACAACAAAGTTCTGAAATTGATCAGAAGTCAGAAAATTCGAAGAGTTCCAGACCTTCAGAAGGTCTAGTTGCTGCAGATGACCATGAAAAGTCAAAAGATGTTCAATCCACACCATTCAGTGGTTCTGCTCGGAGTTGCACTAAAGTTCACAAAATGGGTATTGCACTTGGTAGATCAGTCGACCTCACAAAGTACAGTGACTACATTGGATTAATTGCCGATTTGGATCGAATGTTTGAATTTGGAGGTGAATTAATCTCAGCAAACAAGGATTGGCTTATTGTCTATACTGATAATGAGGGTGATATGATGCTAGTTGGTGATGATCCATGGCAGGAGTTTTGTGCAATTGTTCGCAAAATTTATATCTACCCTAAAGAAGAGATTCAGAAAATGAGCCCGGGGACCTTGAGTTCAAAAAATGAAGATATTCAGTCAGCTAGCGAAGGTGCAGATGCAAATGAAGTTGAAGGTCAGATGAATCAGAAGTTAAATTCTGAAAATGGCTTCGACACCTGA 2523 0.4435 MEASEKIRKGNCLSHNNDGCGVGAEGHNGNLTSSTARDAEAALYRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADQHMPVYDLPSKILCRVINVQLKAEPDTDEVFAQLTLLPEPNQDENAVEKEPPLPQLARFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDLSKQPPTQELVAKDLNGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMKHQGNVPSSVISSHSMHLGVLATAWHAILTGTIFTVYYKPRTSPAEFIVPYNQYMESLKNSYTIGMRFKMRFEGEEAPEQRFTGTVVGVEDSDSKRWPDSKWRSLKVVRWDETSNIPRPGRVSPWKVEPALAPPALNPLPMPRPKKPRSNAIPSSPDSSVLTREASSKVSLDPLPTNGFPRVLQSKKLSTLRGNFAESNKSDTAVKCVAWPPVEDEKIDVSTSRSYGSENWMSMGRHEPTYSDLLSGFGAGGDPSHPSLVDQTGHVAYPASNHSLDHESKLHVHHPWSVMPSSLTLNLMDSTLKEAANVDTTYQARGNLRYSAFGEFPMFRRHHKVEHLHGNLMPPPPSTQYESPHSGELMSNPMSTKTSEAMTLKDGDCKLFGISLISSPIAQEPSALERNVTSEPGGQMYLTSHQQQSSEIDQKSENSKSSRPSEGLVAADDHEKSKDVQSTPFSGSARSCTKVHKMGIALGRSVDLTKYSDYIGLIADLDRMFEFGGELISANKDWLIVYTDNEGDMMLVGDDPWQEFCAIVRKIYIYPKEEIQKMSPGTLSSKNEDIQSASEGADANEVEGQMNQKLNSENGFDT 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0686 840 MobiDBLite consensus disorder prediction 647 712 - -
Lal4g0686 840 MobiDBLite consensus disorder prediction 801 840 - -
Lal4g0686 840 CDD B3_DNA 147 249 IPR003340 GO:0003677
Lal4g0686 840 MobiDBLite consensus disorder prediction 383 429 - -
Lal4g0686 840 Gene3D - 708 801 - -
Lal4g0686 840 Gene3D - 312 383 - -
Lal4g0686 840 MobiDBLite consensus disorder prediction 801 816 - -
Lal4g0686 840 SUPERFAMILY DNA-binding pseudobarrel domain 144 278 IPR015300 -
Lal4g0686 840 MobiDBLite consensus disorder prediction 383 400 - -
Lal4g0686 840 ProSiteProfiles B3 DNA-binding domain profile. 149 251 IPR003340 GO:0003677
Lal4g0686 840 MobiDBLite consensus disorder prediction 647 687 - -
Lal4g0686 840 SMART B3_2 149 251 IPR003340 GO:0003677
Lal4g0686 840 MobiDBLite consensus disorder prediction 402 424 - -
Lal4g0686 840 ProSiteProfiles PB1 domain profile. 712 794 IPR000270 GO:0005515
Lal4g0686 840 SUPERFAMILY CAD & PB1 domains 714 789 - -
Lal4g0686 840 Pfam AUX/IAA family 757 799 IPR033389 -
Lal4g0686 840 MobiDBLite consensus disorder prediction 826 840 - -
Lal4g0686 840 Pfam B3 DNA binding domain 149 250 IPR003340 GO:0003677
Lal4g0686 840 Gene3D - 146 251 IPR015300 -
Lal4g0686 840 PANTHER AUXIN RESPONSE FACTOR 2 28 819 - -
Lal4g0686 840 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 28 819 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lal4g0686 840 Pfam Auxin response factor 275 357 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0686 Lal-Chr4 5384525 5389705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0686 1 834 B3 DNA Binding Superfamily AT5G62000 60.603 0.0 1016
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lal4g0686 B3 3.5e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0686 - - gmx:100803498 1307.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0686 4 5384525 5389705 Lal4g0686 4 5384525 5389705 ECH
Lal17g0818 17 6018799 6023878 Lal4g0686 4 5384525 5389705 LSH
Lal14g1425 14 15492135 15497534 Lal4g0686 4 5384525 5389705 PCT
Lal7g0855 7 15115099 15119902 Lal4g0686 4 5384525 5389705 PCT
Lal19g1003 19 13905353 13910154 Lal4g0686 4 5384525 5389705 PCT
Lal4g0686 4 5384525 5389705 Lal14g1463 14 15706837 15708867 PCT
Lal4g0686 4 5384525 5389705 Lal7g0878 7 15325930 15333898 PCT
Lal4g0686 4 5384525 5389705 Lal19g1027 19 14115848 14117839 PCT