Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0683 ATGCCTTTCGAAATAACGGACAGGAGGGGTGTTTCAGCCACATCCAACTTCTTTGGCGATGTTTCCTTTTCTCCCGAGAGGAATGTTGGATTACAGAAGCTAAAATCCATTCATGACAACTACCCACAAGGAAAGAATGAAACGGCAGCATCTCCCGGCAACATTTTGAGTGCTTCGTTGCCCCTTAAAATAAATGCAGGAATTGGCTTTGTAATGCCCCAGACTAGTCTATCTGCGGAAATTACAGAAAACGAACATTTTGGTGGAGAAGAAGGCATTGCAGGTGTGCTGAAAGATTCCCAGGAAAGACTTAATTATAACCTGAGATCATGGTCTGATGTGCACATACAACCAGCATCTGGCTCATATGGTTTTATTGGGAACAAGATTGTCACAGATGTGGTCTCTCATGAAAGTAGTCTATTCTCAAGCTCGCTGTCCGATATATTTAGCAAAAAGTTGAGGTTATTGGGGAATGGTGCTCTGCCTGATGAGGCCATTAATGTTGGTTCCCTTCACGGGGACGTGCCATATAAGTCTCTTGAAGAAATTGAGGCTGATACGATCGGGAATCTCCTTCCTGACGAAGATGATCTGTTTTCTGGTGTCGATGGCGAGTTAGGAGGCAGTGCTCATGTTAGAACAAGTGATGATTTTGAAGACTTTGATTTGTTCAGCAGTGGGGGAGGCATGGAGTTGGAAGGAGATGCTCATCTGGTTTCAGAAAAAAGAACCAGTTGCATGAGTGCAGATCTTGGTCGCTATAATAAAGGAAATTTTCCTTTTGGTGAACAGTCTTATAGAACACTTTTTGTTAGAAACGTTAATAGTAATGTTGAAGACTCTGAGCTAAAGGCTCTCTTTGAGCAATATGGTGATATCAGGACCATGTATACTGCCTCCAAGCATCATGGGTTTGTTATGATTTCTTATTATGACCTTAGGGCTGCACAAAATGCAATGAAAGCACTCCAGAATATGTTATTGAAGTCTAGGAATCTCGATATACGTTATTCAAATCCAAAGGGCAATGCTCCAGACAAGGATATTGGCCATGGCTCACTGATGATATCTGGTCTTGATTCATCTGTTTTGAATGGTGAACTTAAAAACATTTTTGGATTTTATGGAGAAGTTAAAGGCATCTTTGATTCTCCAGAAACGGACCATATCAAATTTATTGAGTTTTATGATGTACGAGCTGCAGAAGCTTCTCTTCGAGGATTGAACAAGATTTTCATTGCTGGAAAGCAGATCAATCTTGAACCTTGCCATCCTAGGATTTCAGCATGTCTGCTGCAGCAGTCTCAGAAAGGACAAGATGAACCAGATATTCGTCATAATCTTAACGACAATTTATTAGTCAGACAGAAGGTAACATTGTCTTCCGGAGCTGCATCTGGTGGAAGCTTGGAAAATGGATATAATCAGGGATTTCAGTCTGCAACAAAGCTACCTTTGAACACATTATTTCGTGTGAATTCTAGCATTCACAAGACAGCAAGAGGAGCATCTACTGGAAAATCGTATGGCGTTTGTGAGTCCAGTAGTGCTGTTGATGCAATGAAATTTGCATCTATTCCTAGATTCCATCCTCATTCTTTACCCGAGTATCATGGTAGTTTACCTAATGGTAGTCCTTACAACTTTTCAAGCACCATTAGCAACATGGCTCCCAATATTGGTACTGGATCGGCAGAAGTGTCTGGCAGTATGCACATTCACGGAATGGGCTCAACTGAGAACCTAGCCGAATTTAGTGCACGAGGAAATGGGAGCCGCCCAAATGGACTTTATCATATGTGGAACACCACCAACTTGCATCAGCAACACCGATCAAATTCCATGCTTTGGCAGAAGACACCATCCTTTGTTAATGGTGCTGGTACTCAATGTATTCCACAGATGCCCAGCTTTCCCGGAACACCGTCTCATATGCTGAGAGCAACACACGTAGACCACCATGTTGGATCAGCGCCAGTTGTTACAGCCTCGCCCTGGGAAACACAACGTTCTTACTTGGGAGAGTCTCCTGAAGCCTCTGGTTTCCGATTGGGTTCTCTCGGAAGTGCAGGTTTTCAAGATCCCTGGCAGTTGCAACAACCAGATTTTTCTTCTCGCAACATGTTTTCTCATGTCGGTGTGAATGGTACTGAATTGATGTCCAATGCTGGGCAGGGCTCTCCTAAGCAGCTGTCACATGTTTTCCCCGGGCGACTTCCCATGACTTCAATGTCAAAATTTGATACTATCAATGAAAGAATGAGACATCTCTATAATCGTAGAAGTGAAGCAAACACTAACAATGCTGACAAAAAACAATTTGAACTTGACCTAGGCCGAATACTGCGTGGAGAAGACAGCCGAACCACGCTTATGATAAAAAATATTCCCAACAAGTATACGTCAAAGATGCTTCTTGCTGCCATTGATGAGCAATGTCGAGGAACTTATGATTTTCTGTATTTGCCAATTGACTTCAAGGCAAGTATATTTTTGGGGTTGAACAAATGTAATGTTGGCTATGCATTCATCAATATGATTGATCCTGGTCAAATTATTCCATTCCACCAGGCTTTCCATGGAAAGAAATGGGAGAAGTTTAACAGTGAAAAGGTAGCCGTACTTGCATATGCCCGAATTCAAGGAAAATCAACTCTTATTGCTCATTTCCAGAATTCAAGCTTGATGAATGAGGATAAACGTTGCCGCCCTATTCTGTTCCATACAGATGGCCCAAATGCTGGTGATCCGGAGCCTTTTCCCTTGGGTAACAATATTAGACTGAGGCCCGGAAAATCTCGCACTAGCGCTAGCGAGGAGAATCGCAGCCAAGGGAATCCTTCAACTTCGGCAAGTGGAGAGGAGTCTGCTAATGGAATAGAGTCATCAAGAAACTCTGCCTAA 2907 0.4269 MPFEITDRRGVSATSNFFGDVSFSPERNVGLQKLKSIHDNYPQGKNETAASPGNILSASLPLKINAGIGFVMPQTSLSAEITENEHFGGEEGIAGVLKDSQERLNYNLRSWSDVHIQPASGSYGFIGNKIVTDVVSHESSLFSSSLSDIFSKKLRLLGNGALPDEAINVGSLHGDVPYKSLEEIEADTIGNLLPDEDDLFSGVDGELGGSAHVRTSDDFEDFDLFSSGGGMELEGDAHLVSEKRTSCMSADLGRYNKGNFPFGEQSYRTLFVRNVNSNVEDSELKALFEQYGDIRTMYTASKHHGFVMISYYDLRAAQNAMKALQNMLLKSRNLDIRYSNPKGNAPDKDIGHGSLMISGLDSSVLNGELKNIFGFYGEVKGIFDSPETDHIKFIEFYDVRAAEASLRGLNKIFIAGKQINLEPCHPRISACLLQQSQKGQDEPDIRHNLNDNLLVRQKVTLSSGAASGGSLENGYNQGFQSATKLPLNTLFRVNSSIHKTARGASTGKSYGVCESSSAVDAMKFASIPRFHPHSLPEYHGSLPNGSPYNFSSTISNMAPNIGTGSAEVSGSMHIHGMGSTENLAEFSARGNGSRPNGLYHMWNTTNLHQQHRSNSMLWQKTPSFVNGAGTQCIPQMPSFPGTPSHMLRATHVDHHVGSAPVVTASPWETQRSYLGESPEASGFRLGSLGSAGFQDPWQLQQPDFSSRNMFSHVGVNGTELMSNAGQGSPKQLSHVFPGRLPMTSMSKFDTINERMRHLYNRRSEANTNNADKKQFELDLGRILRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKASIFLGLNKCNVGYAFINMIDPGQIIPFHQAFHGKKWEKFNSEKVAVLAYARIQGKSTLIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGNNIRLRPGKSRTSASEENRSQGNPSTSASGEESANGIESSRNSA 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0683 968 SUPERFAMILY RNA-binding domain, RBD 266 425 IPR035979 GO:0003676
Lal4g0683 968 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 353 426 IPR000504 GO:0003723
Lal4g0683 968 CDD RRM1_MEI2_like 268 342 IPR034453 -
Lal4g0683 968 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 355 419 IPR000504 GO:0003723
Lal4g0683 968 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 334 IPR000504 GO:0003723
Lal4g0683 968 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 962 - -
Lal4g0683 968 MobiDBLite consensus disorder prediction 930 968 - -
Lal4g0683 968 Coils Coil 314 334 - -
Lal4g0683 968 Pfam RNA recognition motif 2 789 892 IPR007201 -
Lal4g0683 968 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 341 IPR000504 GO:0003723
Lal4g0683 968 CDD RRM3_MEI2_like 792 884 IPR034454 -
Lal4g0683 968 Gene3D - 351 448 IPR012677 -
Lal4g0683 968 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 962 - -
Lal4g0683 968 MobiDBLite consensus disorder prediction 907 968 - -
Lal4g0683 968 SMART rrm1_1 354 422 IPR000504 GO:0003723
Lal4g0683 968 SMART rrm1_1 269 337 IPR000504 GO:0003723
Lal4g0683 968 Gene3D - 262 350 IPR012677 -
Lal4g0683 968 SUPERFAMILY RNA-binding domain, RBD 791 883 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0683 Lal-Chr4 5343667 5351907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0683 264 423 Eukaryotic Initiation Factors Gene Family AT1G49760 23.077 1.47e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0683 - - aprc:113865455 1375.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0683 4 5343667 5351907 Lal4g0683 4 5343667 5351907 ECH
Lal17g0813 17 5949438 5958082 Lal4g0683 4 5343667 5351907 LSH
Lal14g1422 14 15459404 15467516 Lal4g0683 4 5343667 5351907 PCT
Lal7g0852 7 15080848 15088933 Lal4g0683 4 5343667 5351907 PCT
Lal4g0683 4 5343667 5351907 Lal14g1422 14 15459404 15467516 PCT
Lal4g0683 4 5343667 5351907 Lal7g0852 7 15080848 15088933 PCT