Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0662 ATGTCGAGTTTTCACGTCGGTGGCAAGGTGGTGGACAGAGTTGATTTGTTGAGGAAGAAGCAATGGTTTTGGCGCGTGGATATTACGCCCTTCGCCGTTCTATTTGGCGCGTGGATCGCTGTGATTTGTCCTAGCCTCGATTTCGTTGATGCTGCTATTATTTTCGGTGCGCTCGTTTCTCTTAACATCCTCGTTTTGCTGTTTACCGGTTGGTCCGTTGATTTCAAGTGTTTCGCTCATTATAGCAAGGTTAAGAATATTGACCAGGCTGATTCTTGCAAGATAACTCCGGCGAAGTTCTGCGGTTCTAAAGAAGTGGTGCCGCTTCATTTTCGAAAAATACCTGCAGGTTCTTCATCAGCCATGGACGTGGAAGAGATTTACTTTGAGTTTAGGAAACAATGTTTTGTCTATTCAAAGGAGAAGGGGACTTTTTGCAAACTTTCTTACCCTACCAAGGAAACATTTGGACATTATCTCAAGAGTAGTGGTCATGGCTCTGAAGCTAAAGTTCTTGCTGCTACTGAGAAATGGGGTCGTAATGTATTTGATTATCCTCAGCCAACATTTCAGAAGTTGATGAAAGAGCACTGCATGGAACCTTTTTTTGTATTTCAGGTTTTCTGTGTTGGTCTCTGGTGTTTGGATGAATACTGGTATTACAGTCTGTTTACTCTATTTATGCTGTTTATGTTTGAGTCGACCATGGCAAAAAGTCGGTTGAAGACTCTAACTGAGTTAAGACGTGTTAGAGTGGATAGTCAGATACTAATGGCACATCGATGTGGCAAGTGGGTAAAACTCTCTGGTACGGATCTTTTGCCTGGGGATGTTGTCTCTATAGGTCGCTCTTCTGGTCAGAACGGAGAGGAGAAGTCTGTACCTGCAGACATGCTTATATTGGCTGGAAGTGCAATTGTGAATGAAGCTATTCTCACAGGCGAGTCTACTCCTCAATGGAAGGTTTCAATCATGGCTCGGGGGATTGAGGAGAAGTTGTCAGCAAAGCGAGATAAAAGCCATGTCTTATTTGGTGGTACTAAAGTCCTGCAGCACACTCCAGATAAGACTTTTCCTCTAAAAACGCCTGATGGTGGCTGCTTGGCTGTTGTCTTGAGGACGGGGTTTGAAACAAGTCAAGGAAAGCTGATGCGAACAATCTTATTCTCTACAGAAAGGGTGACTGCGAATAGCTGGGAAAGTGGACTCTTCATTTTATTCTTGGTTGTTTTTGCTCTAATCGCTGCGGGTTATGTGCTTATTAAGGGGCTAGAAGATCCCACAAGGAGCAAGTATAAACTAATACTAAGTTGTTCACTTATTGTTACGTCTGTGATACCTCCTGAGTTACCAATGGAATTGTCAATAGCTGTTAATACTTCTCTGATTGCACTGGCTCGGCGTGGAATTTTTTGTACAGAACCTTTTCGAATACCATTTGCTGGGAAGGTTGATATATGTTGTTTCGACAAGACTGGGACTCTTACATCTGATGACATGGAATTTTCCGGTGTTGTTGGGTTGACAGGAACTACAGATTTGGAATCTGATATGAGTAGAGTGCCTGTGCGAACTGTAGAGATCCTGGCTTCTTGCCATGCATTGGTATTTGTTGAGAATAAGCTGGTTGGCGATCCTCTTGAGAAGGCTGCACTTAAGGGAATTGATTGGAGTTATAAATCTGATGAGAAGGCTATTCCAAAAAAGGGAAATGGCAATCATGTCCAAATTGTTCAGCGGTACCATTTTGCATCTCACTTGAAACGAATGGCTGTTGTTGTTCGCATTCAGGAGGAATTTTTTGCCTTTGTAAAGGGTGCCCCCGAAATTGTTCAAGATAGGATCATTGATGTTCCACCATCATATGTTGAAACCTACAAAAAATATACACGTCAGGGGTCTCGTGTTCTTGCTCTGGCTTACAAGTCTCTTCCTGACATGACAGTCAGTGAAGCTAGAAGTTTGGAAAGGGATTCAGTGGAGAGCGGACTCACATTCGCTGGTTTTGTGGTATTCAATTGTCCTATTAGATCAGATTCAGCCACTGTTTTGTCTGAATTGAAAGCATCCTCACACGACTTGGTGATGATTACTGGTGACCAAGCTTTGACAGCTTGCCATGTTGCTAGTCAAGTTCATATTATATCTAAACCTACATTAATCCTTGGTCCAGCAAGTAACAGTGAAGGATATACTTGGATGTCCCCTGATGAGACTGAAAATATCCGCTACAGTGAGAAAGAGGTTAAGTCTTTATCAGAGACCCATGATCTTTGCGTTGGAGGTGATTGCTTTGAGATGTTGCAACAGACATCGGCTCATTTTCTGGTGTTTGCTAGAGTTGCTCCTGAGCAAAAAGAACTTATCATGACCACTTTCAAAACTGTGGGACGGGTAACACTGATGTGTGGAGATGGAACCAATGATGTTGGAGCTTTGAAGCAGGCTGACGTAGGAGTTGCTCTTCTAAATGCTTTGCCCCCAACTCAAAGTGGGAACTCATCTGGGGAAGAAGGTTCAAAATCTGTCAAGCCAAAGAAATCTAAGCCTGCACCAGGAACATCCGAAAAGACCATTAGTCCAATTGGAGAAGGCACTTCAAAATCCAAAGTTGTTTCAAAATCAGATTCTACCAACTCATCTGTTAACCGTCATCAGGCAGCGGTTGACATGCAACGACAGAAACTTAAGAAGATGATGGATGAGCTTAATGAGGAAGGAGATGGTCGCACACCCATTGTCAAGCTCGGTGATGCCTCAATGGCGTCCCCATTCACTGCAAAGCATGCATCTGTTGCTCCCACTACTGACATAATTCGTCAAGGTCGCAGTACCCTAGTGACAACCCTTCAAATGTTTAAAATTCTGGGTCTCAACTGCCTTGCTACCGCATATGTGTTGAGTGTTATGTATCTTGACGGTGTAAAGTTAGGTGATGTGCAAGCCACAATAAGTGGTGTCTTCACTGCTGCCTTTTTCCTCTTCATCTCACATGCCCGCCCACTTCCCACTCTTTCAGCTGAACGTCCCCACCCAAATATCTTCTGTGCTTATGTATTGCTTTCCCTCTTGGGACAATTTACCATTCACCTGATTTTTCTTATTTCATCTGTGAGAGAGGCTGAAAAATACATGCCTGATGAATGCATTGAACCAGATGCAGATTTTCATCCCAACTTGGTTAATACTGTTTCCTACATGGTGAGCATGATGCTTCAGGTGGCCACTTTCGCTGTAAATTACATGGGCCACCCCTTCAACCAGAGTATTTCTGAAAACAAGCCGTTCCGGTACGCGCTCGTTGCTGCGGTTATTTTCTTCACTGCCATTACATCTGATCTCTTTAGGGACTTAAATGACTGGTTGAAGTTGGTGCCACTTCCAGTGGGATTAAGGGATAAACTATTGCTTTGGGCATTTCTAATGTTCTTGGTATGCTATTCATGGGAGAGACTACTGAGGTGGGCATTCCCTGGTAAGATCCCTTCTTGGCAGAAGCGACAACGGTTAGCGGTATCTAACTTAGAAAGCAAGAAAGAGGTCTAA 3546 0.4346 MSSFHVGGKVVDRVDLLRKKQWFWRVDITPFAVLFGAWIAVICPSLDFVDAAIIFGALVSLNILVLLFTGWSVDFKCFAHYSKVKNIDQADSCKITPAKFCGSKEVVPLHFRKIPAGSSSAMDVEEIYFEFRKQCFVYSKEKGTFCKLSYPTKETFGHYLKSSGHGSEAKVLAATEKWGRNVFDYPQPTFQKLMKEHCMEPFFVFQVFCVGLWCLDEYWYYSLFTLFMLFMFESTMAKSRLKTLTELRRVRVDSQILMAHRCGKWVKLSGTDLLPGDVVSIGRSSGQNGEEKSVPADMLILAGSAIVNEAILTGESTPQWKVSIMARGIEEKLSAKRDKSHVLFGGTKVLQHTPDKTFPLKTPDGGCLAVVLRTGFETSQGKLMRTILFSTERVTANSWESGLFILFLVVFALIAAGYVLIKGLEDPTRSKYKLILSCSLIVTSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDICCFDKTGTLTSDDMEFSGVVGLTGTTDLESDMSRVPVRTVEILASCHALVFVENKLVGDPLEKAALKGIDWSYKSDEKAIPKKGNGNHVQIVQRYHFASHLKRMAVVVRIQEEFFAFVKGAPEIVQDRIIDVPPSYVETYKKYTRQGSRVLALAYKSLPDMTVSEARSLERDSVESGLTFAGFVVFNCPIRSDSATVLSELKASSHDLVMITGDQALTACHVASQVHIISKPTLILGPASNSEGYTWMSPDETENIRYSEKEVKSLSETHDLCVGGDCFEMLQQTSAHFLVFARVAPEQKELIMTTFKTVGRVTLMCGDGTNDVGALKQADVGVALLNALPPTQSGNSSGEEGSKSVKPKKSKPAPGTSEKTISPIGEGTSKSKVVSKSDSTNSSVNRHQAAVDMQRQKLKKMMDELNEEGDGRTPIVKLGDASMASPFTAKHASVAPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDVQATISGVFTAAFFLFISHARPLPTLSAERPHPNIFCAYVLLSLLGQFTIHLIFLISSVREAEKYMPDECIEPDADFHPNLVNTVSYMVSMMLQVATFAVNYMGHPFNQSISENKPFRYALVAAVIFFTAITSDLFRDLNDWLKLVPLPVGLRDKLLLWAFLMFLVCYSWERLLRWAFPGKIPSWQKRQRLAVSNLESKKEV 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0662 1181 TIGRFAM P-ATPase-V: P-type ATPase of unknown pump specificity (type V) 42 1138 IPR006544 GO:0006812|GO:0016021|GO:0019829|GO:0140358
Lal4g0662 1181 SUPERFAMILY Calcium ATPase, transduction domain A 258 387 IPR008250 -
Lal4g0662 1181 PANTHER CATION-TRANSPORTING ATPASE 1 1172 - -
Lal4g0662 1181 PRINTS P-type cation-transporting ATPase superfamily signature 308 322 - -
Lal4g0662 1181 PRINTS P-type cation-transporting ATPase superfamily signature 488 502 - -
Lal4g0662 1181 PRINTS P-type cation-transporting ATPase superfamily signature 690 700 - -
Lal4g0662 1181 PRINTS P-type cation-transporting ATPase superfamily signature 803 822 - -
Lal4g0662 1181 SUPERFAMILY HAD-like 483 828 IPR036412 -
Lal4g0662 1181 PANTHER CATION-TRANSPORTING ATPASE-RELATED 1 1172 - -
Lal4g0662 1181 CDD P-type_ATPase_cation 170 1096 - -
Lal4g0662 1181 SFLD Haloacid Dehalogenase 469 944 - -
Lal4g0662 1181 SUPERFAMILY Calcium ATPase, transmembrane domain M 164 1158 IPR023298 -
Lal4g0662 1181 Coils Coil 882 906 - -
Lal4g0662 1181 MobiDBLite consensus disorder prediction 853 888 - -
Lal4g0662 1181 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 494 678 IPR023299 GO:0000166
Lal4g0662 1181 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 574 715 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal4g0662 1181 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 762 822 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal4g0662 1181 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 403 509 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal4g0662 1181 Gene3D - 669 832 IPR023214 -
Lal4g0662 1181 Pfam haloacid dehalogenase-like hydrolase 485 713 - -
Lal4g0662 1181 Gene3D - 225 388 - -
Lal4g0662 1181 ProSitePatterns Hypothetical cof family signature 2. 803 825 - -
Lal4g0662 1181 Pfam E1-E2 ATPase 261 468 - -
Lal4g0662 1181 MobiDBLite consensus disorder prediction 825 888 - -
Lal4g0662 1181 ProSitePatterns E1-E2 ATPases phosphorylation site. 490 496 IPR018303 -
Lal4g0662 1181 Gene3D - 483 668 IPR023299 GO:0000166
Lal4g0662 1181 SFLD p-type atpase 469 944 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0662 Lal-Chr4 5035759 5048927 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0662 1 1181 Primary Pumps ATPases AT5G23630 76.574 0.0 1883
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0662 K14950 - gmx:100789385 2119.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0662 4 5035759 5048927 Lal4g0662 4 5035759 5048927 ECH
Lal17g0795 17 5824336 5836658 Lal4g0662 4 5035759 5048927 LSH