Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0660 ATGGGTAGATCTCCTTGTTGTGAGAAAGAACACACAAACAAAGGAGCTTGGACCAAAGAAGAAGATGAACCCCTTATTAACCACATCAAGATTCATGGTGAAGGCTGTTGGAGATCTCTTCCTAGAGCTGCTGGTTGGTATATCTATCATCCACGTAATACGTTAAATCGGAGACTCGTGCACTTAGCTACCCTTTATACCCTTCTACTTAGTTGCAGACTCAGATGGATAAACTACCTGAGACCTGATCTAAAGAGAGGAAATTTCAGTGAAGAAGAAGATGAGATTATCATTAACCTTCATAGCTTACTCGGAAAAAAATGGTCTCTAATAGCTGCAAGGTTACCTGGTAGAACAGATAACAAAATCAAGAATTATTGGAACACCCACATAAAGAGAAAACTATATAGTTGTGGAATCAACCCCAAAAGCCACCAACCACTCAATGCCTCTGCTGCTGCTACCACCACCACTCCCACCGCCACCACAGCTCCGCCTGCTAATACCGTGGCCACTGTAAGCAACAAGAAAAGGAACAATGATAGCATTAGCAACATCAACCATGAAACTAGCAACAAGAATAATTTTCAGTTGGTTAATGGTACTGATGAAGATTCAAATTGCAGCAGTGGCGTTACCACAGAGGAATTAGCCTCTCACCCTCATAATAATCAACTCAACTTAGACCTTTCTATTGGTCTTTCTACTGATCAACCCAAAGTTTCTTCTTCTACGATGAACCATGAAAACAACAAGAAGTTGAAACAAGAACCACAATTTTTGTACCAGTGGTACAATGGGAACAACATTAATATTACTCAACATGGCGTGTGTCTTTGTTATGGTCTAGGGTTTCAAAGCAACAACCAAGCATGTAGCTGCAAAGCCATGGGAACTAGTACTACTACTACAGTTAGTGCTACAATTGCTACCAATAATGATATGTATAGATTTTACCAACCCATGAGTTTTTAG 975 0.4021 MGRSPCCEKEHTNKGAWTKEEDEPLINHIKIHGEGCWRSLPRAAGWYIYHPRNTLNRRLVHLATLYTLLLSCRLRWINYLRPDLKRGNFSEEEDEIIINLHSLLGKKWSLIAARLPGRTDNKIKNYWNTHIKRKLYSCGINPKSHQPLNASAAATTTTPTATTAPPANTVATVSNKKRNNDSISNINHETSNKNNFQLVNGTDEDSNCSSGVTTEELASHPHNNQLNLDLSIGLSTDQPKVSSSTMNHENNKKLKQEPQFLYQWYNGNNINITQHGVCLCYGLGFQSNNQACSCKAMGTSTTTTVSATIATNNDMYRFYQPMSF 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0660 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 39 IPR017930 -
Lal4g0660 324 SMART sant 13 82 IPR001005 -
Lal4g0660 324 SMART sant 85 133 IPR001005 -
Lal4g0660 324 Gene3D - 6 85 - -
Lal4g0660 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 135 IPR017930 -
Lal4g0660 324 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 45 - -
Lal4g0660 324 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 71 260 - -
Lal4g0660 324 CDD SANT 88 131 IPR001005 -
Lal4g0660 324 MobiDBLite consensus disorder prediction 176 195 - -
Lal4g0660 324 ProSiteProfiles Myb-like domain profile. 9 80 IPR001005 -
Lal4g0660 324 Gene3D - 88 159 - -
Lal4g0660 324 ProSiteProfiles Myb-like domain profile. 81 131 IPR001005 -
Lal4g0660 324 Pfam Myb-like DNA-binding domain 86 130 IPR001005 -
Lal4g0660 324 PANTHER TRANSCRIPTION FACTOR MYB7 71 260 - -
Lal4g0660 324 PANTHER TRANSCRIPTION FACTOR MYB7 1 45 - -
Lal4g0660 324 SUPERFAMILY Homeodomain-like 13 127 IPR009057 -
Lal4g0660 324 CDD SANT 16 80 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0660 Lal-Chr4 5025379 5026935 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0660 1 170 MYB Transcription Factor Family AT4G38620 64.118 9.91e-74 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal4g0660 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0660 K09422 - gmx:778033 350.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0660 4 5025379 5026935 Lal4g0660 4 5025379 5026935 ECH
Lal17g0793 17 5805369 5806910 Lal4g0660 4 5025379 5026935 LSH
Lal21g0682 21 5309627 5311383 Lal4g0660 4 5025379 5026935 LSH