Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0657 ATGGATAAGTACGAGGCTGTGAAGGATTTGGGAGCTGGGAATTTTGGGGTGGCAAGGCTTATGAGGCACAAGGAAACTAAGGAACTTGTTGCCATGAAATACATCGAGCGTGGTCACAGGAATCGCATACTTTCGATGTGGGACACTAGTCTCGTGCCGCGGTCTGGCTATGCACTAGCCGTTTTTGACAAGTCTTGGGTGAATACTGCAATGTTGGCTTCTAAATGGACATCTGTGGTTCTAAGTTTTTTTCGTCACCAATTTCAGATTGATGAGAACGTGGCAAGAGAGATTATCAACCATCGGTCCCTTAGGCATCCAAATATAATTCGCTTCAAGGAGGCAAGTATTTTACTTCTTTTATTTAACCAGTTGGATCACTTTGTGGTTCTGACTCCAACACATTTAGCAATAATAATGGAGTATGCTGCTGGAGGAGAACTCTTCGAGAGAATATGTAGTGCTGGCAGGTTCAGTGAAGATGAGGCCAGATATTTCTTTCAGCAGCTGATCTCTGGTGTTCATTTCTGTCATGCCATGCAAATATGCCACAGAGATTTGAAGCTAGAAAATACCCTTTTAGATGGAAGTCCTGCTCCTCGCTTGAAAATTTGCGACTTTGGTTATTCCAAGTCATCTTTGCTGCATTCAAGACCCAAATCAACGGTTGGAACACCAGCTTATATAGCACCAGAGGTTCTTTCTAGGAGAGAGTATGATGGCAAGTTGGCCGATGTATGGTCATGTGGGGTGACTCTATACGTTATGCTGGTTGGAGCATATCCCTTTGAGGATCAGGATGACCCTAGGAATTTTAGGAAAACAATTCAACGGATAATGGCTGTTCAGTACAAAATCCCTGATTATGTTCACATATCTGAAGATTGCAAACACCTCCTCTCTCGTATATTTGTTGCAAATCCCCTGAGGAGAATTACTCTAAAGGAAATTAAGAACCATCCATGGTTTCTAAAGAATCTTCCCAGGGAGCTAACTGAATCAGCTCAAGCTATCTATTATCAGAGAGACAACCCAATGTTTCACGTCCAAAGCGTGGACGAGATAATGAAAATTGTTGGAGAGGCAAGGAACCCACCTCCGGTTTCTAGTGCTGTCAAAGGTTTTGGCTTTGAAGGGGAAGAAAACGAAGGAGAAGATTTGGATGGAGAAGTAGAGGAAGAGGATGATGACGAAGACGAGTATGATAAGCGGGTCAAAGAGGTTCATGCAAGTGGAGAATTCCAAATTAGTTGA 1254 0.4298 MDKYEAVKDLGAGNFGVARLMRHKETKELVAMKYIERGHRNRILSMWDTSLVPRSGYALAVFDKSWVNTAMLASKWTSVVLSFFRHQFQIDENVAREIINHRSLRHPNIIRFKEASILLLLFNQLDHFVVLTPTHLAIIMEYAAGGELFERICSAGRFSEDEARYFFQQLISGVHFCHAMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQDDPRNFRKTIQRIMAVQYKIPDYVHISEDCKHLLSRIFVANPLRRITLKEIKNHPWFLKNLPRELTESAQAIYYQRDNPMFHVQSVDEIMKIVGEARNPPPVSSAVKGFGFEGEENEGEDLDGEVEEEDDDEDEYDKRVKEVHASGEFQIS 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0657 417 CDD STKc_SnRK2 3 322 - -
Lal4g0657 417 Gene3D Phosphorylase Kinase; domain 1 1 49 - -
Lal4g0657 417 MobiDBLite consensus disorder prediction 381 401 - -
Lal4g0657 417 SUPERFAMILY Protein kinase-like (PK-like) 1 352 IPR011009 -
Lal4g0657 417 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2H 81 410 - -
Lal4g0657 417 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2H 2 40 - -
Lal4g0657 417 Pfam Protein kinase domain 90 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal4g0657 417 ProSiteProfiles Protein kinase domain profile. 4 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal4g0657 417 SMART serkin_6 4 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal4g0657 417 PANTHER SERINE/THREONINE KINASE 2 40 - -
Lal4g0657 417 PANTHER SERINE/THREONINE KINASE 81 410 - -
Lal4g0657 417 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Lal4g0657 417 Gene3D Transferase(Phosphotransferase) domain 1 73 364 - -
Lal4g0657 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 182 194 IPR008271 GO:0004672|GO:0006468
Lal4g0657 417 MobiDBLite consensus disorder prediction 370 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0657 Lal-Chr4 4972359 4976021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0657 3 326 CBL-interacting serine-threonine protein kinases AT4G24400 35.258 3.64e-56 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Lal4g0657 Pkinase 1.4e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0657 K14498 - gmx:100804018 595.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0657 4 4972359 4976021 Lal4g0657 4 4972359 4976021 ECH
Lal21g0680 21 5278416 5285124 Lal4g0657 4 4972359 4976021 LSH
Lal14g1408 14 15363921 15366547 Lal4g0657 4 4972359 4976021 PCT
Lal19g0980 19 13717213 13721247 Lal4g0657 4 4972359 4976021 PCT
Lal4g0657 4 4972359 4976021 Lal14g1408 14 15363921 15366547 PCT
Lal4g0657 4 4972359 4976021 Lal19g0980 19 13717213 13721247 PCT