Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0627 ATGCCAACTTGGTGGAGTAAAAAACCACGCAAAACCCAACAACACGACCAACCAAATGAAAACACTACAAGCACTTTTCTTAACTTCATCAACAAGTCACACATAAAAAAGGTTAAGAAAAACGGTGAAAAACAATTGGGTTTTGATGAAGTCACCGGCGCCGCCTTTCTTTCCCGGAATTCACCTAGAGCTAGCAAGGATTTTACTTTATACGGTGGCGCCGCCGATTCAGATGGTGGTGATAAGATAGGACTCCCTTTACCGCGTCCTTCTGTTTCTTCAAACACTGGTAATGATCAAGGCCTTGTTTTTGGATCTGGTTCTTTCTCTGCTGCTTCTAGCGTTAGTTCTTCTGGTTCCTTGGATGATCATTCTATTTCTCAAATTAACGCTACAAGAGGACAAGTTGACATGAAGTTCAATGTGAGGCCAAAAAGCCCAGGTCCTGGTTCAAGAGGGCCTACCAGCCCTACTTCCCCTCTTCATCCGAGGTTGAATGTTTTGAGTCTTGACTCCCCGACTGTTAGGCAAGAAGATGGAAGTTGTCAATGCCATCCATTGCCTCTTCCTCCAGGCTCTCCTACAAGTACGTCTTCTCTATCGAACACACGAACAAATGGACAGCCAGAAAACACTATCAGTAACCGGGGCAAGTGGAAGAAAGGAAAACTTCTAGGGCGGGGAACATTTGGGCATGTTTACCAAGGATTCCATAGTGAAAGTGGACAGATGTGCGCAATAAAAGAAGTAAGGGTTATCTGCGATGACCGATCATCAAAAGAGTGCCTCAAACAACTTAATCAGGAGATACATTTGCTTAGTCAGCTTTCACATCCAAACATTGTTCAGTACCATGGGAGTGACTTGGGAGATGAAGCACTTTCAGTTTATTTGGAATTTGTATCCGGTGGTTCCATTCATAAACTACTTCAGGAATATGGATCCTTTGGGGAGCCAGTTATTCAAAATTATACCAGGCAGATTGTCTCTGGACTCTCCTATCTGCATGGAAGAAATACAGTACATAGGGATATCAAAGGGGCTAATATACTAGTTGATCCTAATGGTGAAATCAAGTTGGCAGACTTTGGAATGGCTAAACATATAAATTCCTCTGCCTCAATGCTTTCTTTCAAAGGAAGTCCATATTGGATGGCACCTGAGGTTGTGATGAATATAAACGGTTATAGTCTTCCTGTTGATATATGGAGTTTGGGATGCACAATTCTCGAAATGGCAATGTCGAAGCCTCCTTGGAGTCAGTATGAAGGGGTAGCTGCAATATTTAAAATTGGTAACAGCAAAGATATGCCCGAAATTCCGGAGCATCTTTCAAATGATGCAAAGAATTTTATTAAGCTATGCTTACAAAGAGATCCATCAGCTCGTCCAACAGCTCAAATGCTACTAGACCACCCCTTTATTCGAGACCAACCAGCAACAAAATCTGCAAATGTCAGCATAACCAGAGATGCTTTCCCTTACATGTTTGATGGAAGCCGGACGCCGCCAGTTTTAGAGCATCATTCCAATTCAAATCGAACAAACAATACTCTAATAAACGGAGACTATGCAACAATGCAAGTTGTCGCATCTTCACGAGCAGTAAGGAGCCCAAGAGATAACACAAGAATGATCACTTCTTTACCGGTGTCTCCCTGCTCAAGTCCATTGAGACAATATGGACCAGCACACAATAGCTGTTTCCTTTCTCCTCCTCATCCTTCATACACAATGATGGGACAAAATAACCTCAATTCATATCCATTAAGATCGAATGCCGCATTCACTCTCGACCCTTGGCAGGAAGGATCTCTATACAGAGGTCACACCCCGTCCGGCGGATCCCCGAGAACAAGACTCATTTGA 1869 0.4312 MPTWWSKKPRKTQQHDQPNENTTSTFLNFINKSHIKKVKKNGEKQLGFDEVTGAAFLSRNSPRASKDFTLYGGAADSDGGDKIGLPLPRPSVSSNTGNDQGLVFGSGSFSAASSVSSSGSLDDHSISQINATRGQVDMKFNVRPKSPGPGSRGPTSPTSPLHPRLNVLSLDSPTVRQEDGSCQCHPLPLPPGSPTSTSSLSNTRTNGQPENTISNRGKWKKGKLLGRGTFGHVYQGFHSESGQMCAIKEVRVICDDRSSKECLKQLNQEIHLLSQLSHPNIVQYHGSDLGDEALSVYLEFVSGGSIHKLLQEYGSFGEPVIQNYTRQIVSGLSYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKHINSSASMLSFKGSPYWMAPEVVMNINGYSLPVDIWSLGCTILEMAMSKPPWSQYEGVAAIFKIGNSKDMPEIPEHLSNDAKNFIKLCLQRDPSARPTAQMLLDHPFIRDQPATKSANVSITRDAFPYMFDGSRTPPVLEHHSNSNRTNNTLINGDYATMQVVASSRAVRSPRDNTRMITSLPVSPCSSPLRQYGPAHNSCFLSPPHPSYTMMGQNNLNSYPLRSNAAFTLDPWQEGSLYRGHTPSGGSPRTRLI 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0627 622 ProSitePatterns Protein kinases ATP-binding region signature. 225 248 IPR017441 GO:0005524
Lal4g0627 622 SUPERFAMILY Protein kinase-like (PK-like) 217 538 IPR011009 -
Lal4g0627 622 MobiDBLite consensus disorder prediction 1 27 - -
Lal4g0627 622 MobiDBLite consensus disorder prediction 130 216 - -
Lal4g0627 622 MobiDBLite consensus disorder prediction 194 215 - -
Lal4g0627 622 MobiDBLite consensus disorder prediction 157 179 - -
Lal4g0627 622 Pfam Protein kinase domain 220 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal4g0627 622 CDD STKc_MEKK1_plant 218 475 - -
Lal4g0627 622 ProSiteProfiles Protein kinase domain profile. 219 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal4g0627 622 PANTHER MAP KINASE KINASE KINASE 1 603 - -
Lal4g0627 622 SMART serkin_6 219 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal4g0627 622 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 603 - -
Lal4g0627 622 Gene3D Transferase(Phosphotransferase) domain 1 216 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0627 Lal-Chr4 4667493 4673371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0627 1 540 MAP Kinase Kinase Kinase AT1G53570 56.239 0.0 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lal4g0627 Pkinase 1.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0627 K04421 - gmx:100813122 840.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0627 4 4667493 4673371 Lal4g0627 4 4667493 4673371 ECH
Lal17g0739 17 5268767 5274525 Lal4g0627 4 4667493 4673371 LSH
Lal21g0664 21 5135985 5142060 Lal4g0627 4 4667493 4673371 LSH
Lal15g1393 15 16104818 16110124 Lal4g0627 4 4667493 4673371 PCT