Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0621 ATGAGTGGAAGTGCCAGAAAGCGCTCTTCAAAGTGGGATATGAGAGATGGCCCTGAATTTGCACCTGATAGTAAGCAAATGCGTTCTTATTTGGAAGGAAATGATAAGTCAAAGTCTGGTATGGGGTTTTCATCTAAGGAACCTTTTTCCAGAGGCAGAGGTTCAAATAAGGATGATATTATGAATAAAGACTATAGAGATTGGGATGAAACAATGGAATGGGATGCTGATGGAAGTTACAACAAGAAATTTTCTCCTGGGTTTGAGGAATGGAAACATAAGAGACATAGTCAATCCCCAAAAAATGGTCCGAGCATGTCAGTCAGACGTATTTTCCCTACGCTTTATATTTCCTTTCTTGAACACATCACACACACAGATTATGTCTCCCATGTCTGTATTTGTGTGGAAGAGCTTGTTTCTTTATGGCCTTCCTTTGGATTTGGCTTACCTAGGAGTAGTCGGAGCAGGAGCCCTCTCCATGGTTTTAGGCGGGATTCAGGATTCAATGACATAAATAGAACGAGGGCTGGAGGATCATTACAACCATGTAGAGAGTTTGCTGCTGGTAAATGCAGAAGAGGCAGCCATTGCCATTTTCTTCACCATGATAATCAAAATTATGAGGATAGTTGGGAAAGTAAGCACACGGAAGAAGGTGCTCCCAAATATTATGCTCCCCATGACAGTAGAGACCATTCTCATAGGAGTGGTAGATCTAATGAAGCTTGCATTAATTTTGCTAAAGGCAGGTGTAGAATGGGATCATCTTGTAACTTTGTGCATAATACTTCTGATGGATACAGTAAAGGTTCTGTGGATGAATCAAATAGAGAAAGGGAAAATGATAGAAGACGCAGAGATAATTCTTTTGATCAGGGTGGTGGGCATGGGCCCAACCGTAGCGGTCCTACTCCTTGCAAATTTTTTGCTAATGGAAACTGCCGTAATGCTAAACATTGTAGGTTTTCTCATGATAGGCAAGCATATGGTAGCTCTCCTAATAGAAGATCGAAGGATGATAAGTGGGGGAGCAATCCGGGTGAAGACCATCAGACGTTGGATAGACGAGAATTGATTGACTCAGTTAGTCCTACTGGAAGACTAAGAGATGATAGATGGGGTTCAGATGGAAATATGGTAGACAAGGACAATCCAAAGCGGAATGATACAGTTGCTGTGTCTGATACATCAAAACTGGTTGAGGACAAATGTGGAAATATAGGTGCCTCAGATCCTGGATTTACTTCTTGGCCTACAAAGGATGGATGGGGTCATGCTTTAGATAAGAACAGAGAGCATAGTGAACCAACATTTTCGAGTGATAAGGAAACTGGCCATTGGATGGCAGAAAATGCTGGTGCCAACAGGCACGTTCCCCAGCCAACAGGTATAGGCAATTGGTCTGGTGATGAAATGTCTCCTGATTGGAATTATCGGGTGGGATCTTCCAGTCATGTTCAAGAAGAGCATGGGATAACCCAGGGTGGTACATATTTAGCCACTGAACATGAAGAAACACAAGTTACTCCAGGGCAAGCCTTGAATCAGAATGCGCAGAATATAAATCCTTTGCATTCTTCAAGCGGCCATGGAGTTGGACAAAGTCAAGTGGCTGTTCCCATTCTTCCTTCAAGAGGAGTTGTAGAAAGTATGCATAACCAACAAGTTTCTGCTAAACTTCCAGAGCAGGGCTTTAATCAGAATGCACAGAATCCAAGTCTGAATCCCTTTCATTCTTCAAGCAGCCATGCAGTTGGGCAAAGTCAAGTGGCTGTTCCGGGTCTTCCTTCAAGAGGAGTACATGAAAGTATGGATAACCAACAAGTTTCTACTGATGTTTCCCCAGGGCAAGGGTTTAATCAGAATCCACAGAATATAAATCCTTTTTATTCTTCAGGTGGCCATGCAGTTGGACAAAGTCAAGTTGCTGCTCCCATTCTTCATTCAAGAGGAGTCATTGAAAGTATGCATAAGCAACAAGTTTCGAATGATGTTCTTCCAGGGCAAGTCTTTAATCACAATGCACAAAATATAAATCCTTTGCATTCTTCAAGTGGCCATGCAGTTGGACAAAGTCAAGTTGCTGTTCCCATTCTCCCTTCAAGAGGAATTGTTGGAAGTATGCATAACCAAGAAGTCTCTGCTGAGAAAAAGTACACTGTTGAACCAAATATCACGGATGAAGGCTTATTACAAGGTAGTTCAAGAAATCCTCCTACTAAGAATATAGTAAGCAATGAACAGCTTACTCAGCTTAGCAATCTCTCAGCTTCTCTGGCTCATATCCTTGGAACAGGTCAGCAACTGCCACAACTTTATGCTGCTTTAAATTCTAATGATGCAAAGGATACTTCCTCATTAGCCAAAATTGAAGTGCCAGCTATTCCTGTTTCCAATACATTCATCAAGCCAGATCCTGTGCTTGGATACAGGAAGCAGTATGATCCAATGTGTGATAGCATTGAAACAAAGAATGTTGTTGCAAGTAGGGCTACCCCTGCCTTTACTCCAAGTAAAAAGAACGCAGAAGATAAAGTAGAAATTCCATCACTAGTGTCTAACTTGGGGAGACAAAATTGTGGCAGCTCTTTTAAGGCTGTCTGCTCAGAAGAGCATTTAATCCAGCTGCAGCCAGGTCGAAACCTTGACGTTAATAAGGAGAAGAATGAAGTGGTAGTTGAGGAAAGGCAAAACTCTCCAGGTGATCATAAAAAAACAAAAGAGAATGGTCCTTTGGTTATGGACCAAAAAGGTGGACCTGATGACGATAAGAAATCAAAGGATGCAAAGGGGATTCGTACATTTAAATTTGCATTGGTTGACTTTGTTAAGGAACTTCTGAAACCTGCATGGAAAGAAGGTCAAATTAACAAAGAAGATTATAAAGCAATTGTGAAGAAAGTTGTTGATAAAGTAACTGGCACCATGCAGGGCACCAGTGTTCCTCAGACACAAGAGAAAATTGACCACTATTTGTCATTCTCAAAACCAAAACTTAGCAAACTCGTACAGGCTTATGTGGAAAAGGTTCAGAAGGCTTAG 3045 0.4158 MSGSARKRSSKWDMRDGPEFAPDSKQMRSYLEGNDKSKSGMGFSSKEPFSRGRGSNKDDIMNKDYRDWDETMEWDADGSYNKKFSPGFEEWKHKRHSQSPKNGPSMSVRRIFPTLYISFLEHITHTDYVSHVCICVEELVSLWPSFGFGLPRSSRSRSPLHGFRRDSGFNDINRTRAGGSLQPCREFAAGKCRRGSHCHFLHHDNQNYEDSWESKHTEEGAPKYYAPHDSRDHSHRSGRSNEACINFAKGRCRMGSSCNFVHNTSDGYSKGSVDESNRERENDRRRRDNSFDQGGGHGPNRSGPTPCKFFANGNCRNAKHCRFSHDRQAYGSSPNRRSKDDKWGSNPGEDHQTLDRRELIDSVSPTGRLRDDRWGSDGNMVDKDNPKRNDTVAVSDTSKLVEDKCGNIGASDPGFTSWPTKDGWGHALDKNREHSEPTFSSDKETGHWMAENAGANRHVPQPTGIGNWSGDEMSPDWNYRVGSSSHVQEEHGITQGGTYLATEHEETQVTPGQALNQNAQNINPLHSSSGHGVGQSQVAVPILPSRGVVESMHNQQVSAKLPEQGFNQNAQNPSLNPFHSSSSHAVGQSQVAVPGLPSRGVHESMDNQQVSTDVSPGQGFNQNPQNINPFYSSGGHAVGQSQVAAPILHSRGVIESMHKQQVSNDVLPGQVFNHNAQNINPLHSSSGHAVGQSQVAVPILPSRGIVGSMHNQEVSAEKKYTVEPNITDEGLLQGSSRNPPTKNIVSNEQLTQLSNLSASLAHILGTGQQLPQLYAALNSNDAKDTSSLAKIEVPAIPVSNTFIKPDPVLGYRKQYDPMCDSIETKNVVASRATPAFTPSKKNAEDKVEIPSLVSNLGRQNCGSSFKAVCSEEHLIQLQPGRNLDVNKEKNEVVVEERQNSPGDHKKTKENGPLVMDQKGGPDDDKKSKDAKGIRTFKFALVDFVKELLKPAWKEGQINKEDYKAIVKKVVDKVTGTMQGTSVPQTQEKIDHYLSFSKPKLSKLVQAYVEKVQKA 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0621 1014 Pfam RNA-binding, Nab2-type zinc finger 306 325 - -
Lal4g0621 1014 Pfam RNA-binding, Nab2-type zinc finger 183 202 - -
Lal4g0621 1014 ProSiteProfiles Zinc finger C3H1-type profile. 301 328 IPR000571 GO:0046872
Lal4g0621 1014 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 659 1012 - -
Lal4g0621 1014 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 1 552 - -
Lal4g0621 1014 MobiDBLite consensus disorder prediction 272 292 - -
Lal4g0621 1014 MobiDBLite consensus disorder prediction 326 391 - -
Lal4g0621 1014 SMART c3hfinal6 179 204 IPR000571 GO:0046872
Lal4g0621 1014 SMART c3hfinal6 301 327 IPR000571 GO:0046872
Lal4g0621 1014 SMART c3hfinal6 239 264 IPR000571 GO:0046872
Lal4g0621 1014 MobiDBLite consensus disorder prediction 8 22 - -
Lal4g0621 1014 ProSiteProfiles Zinc finger C3H1-type profile. 238 265 IPR000571 GO:0046872
Lal4g0621 1014 MobiDBLite consensus disorder prediction 880 929 - -
Lal4g0621 1014 Gene3D - 179 266 - -
Lal4g0621 1014 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 659 1012 - -
Lal4g0621 1014 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 552 - -
Lal4g0621 1014 ProSiteProfiles Zinc finger C3H1-type profile. 178 205 IPR000571 GO:0046872
Lal4g0621 1014 MobiDBLite consensus disorder prediction 594 615 - -
Lal4g0621 1014 SUPERFAMILY CCCH zinc finger 305 326 IPR036855 GO:0046872
Lal4g0621 1014 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 242 263 IPR000571 GO:0046872
Lal4g0621 1014 Gene3D - 293 335 - -
Lal4g0621 1014 MobiDBLite consensus disorder prediction 884 929 - -
Lal4g0621 1014 MobiDBLite consensus disorder prediction 265 306 - -
Lal4g0621 1014 MobiDBLite consensus disorder prediction 326 390 - -
Lal4g0621 1014 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0621 Lal-Chr4 4585432 4594437 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal4g0621 zf-CCCH 0.00031 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0621 - K22909 gmx:100783856 673.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0621 4 4585432 4594437 Lal4g0621 4 4585432 4594437 ECH
Lal21g0661 21 5094294 5099102 Lal4g0621 4 4585432 4594437 ECH
Lal21g0661 21 5094294 5099102 Lal4g0621 4 4585432 4594437 LSH