Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0619 ATGGTGATCTCTAATGGAGGACATGGTGATGTGTTCTTTGACTCAGTGGATTGTTTGTCACCCCCTCAAGAGTGTGTTTTGACAAAACAAGAGTTAGGTTATGAGGTTTGGATGAATGAGCCTCTTAGTGTGAAGGAAAGAAGGGAAAGTTTTCTACAAGAGATGGGTTTGGTTGAAGTTTCTTCCAAGGTTTGTTTGCAAGAGAAAATGTTGAGCTTGGGAATTGAAAGGGTCAAGGATTGCATTGTGCTTGATGATAGGGTTCCTGAGAAGTTGGTTCCGTCGAGCGAGGAATCAAGTTCTGAAGCACAAGTATTTCTAGATGAATTCAAAGGGTGCCAAGACCATGAAGATAAAGAGGATAGAAGTTTTCAAGGGAAGGTGTACGAGCCCTCTTCTTCAGGTCAAGAGCACAGAGATAGAGAAGCTGAAGCTGTAGAAGAATTTAAGGAGTTTGAAATTTGTAAGAAGAATAAGAAAAGATGGTGGGAGCGTTTCGTTAACGGCGGAAAAGAAGGCGAGGGGAAAGATAGATCAAAACTGAATAGAAGGACAAGAAAGAGTAATAGAATACATGTAAAGCAGAACAAAAAGAAGTGGATGGAATTCAGTGCAGTTTACATTGGACAAGAAATTAGAGCACACAAAGGCCTAATCTGGACTATGAAATTTAGTCCCAATGGCAAGTATCTTGCTAGTGGAGGTGAAGACGGTGTTATACGGATTTGGCGTGTTTTATCCCTCGATACATCCGGTGTTTGCTTCAGCGCACACGACAGTATTACGAGGGAAGTTAAACATGACATTTGTTCTCAGAGGAAAAACTCAAGCCAATCTTTGAAGGTGCTTCCAAAAAAGATTTTACAAATTGAGGAATCACCGCTGCAAGAATTTTATGGTCATTCTGGCGATGTCTTGGATTTAGCATGGTCTAATTCAGATATTCTCCTTTCATCTTCTACCGATAAAACTGTTCGGTTGTGGCAAATTGGTTATGATGAATGTCTAAATATTTTCCATCACAGAGACTATGTGACATGCATTCAATTCAACCCTGTTGATGAAAATTACTTCATCAGTGGGTCCATAGATGGTAAAGTCCGAATATGGGGGGTACATGAAGAACGGGTAGTTGATTGGGCAAACATACGAGATGTCATAAGTGCTATAAGTTACCAGCCAGATGGAAAGGGGTTTGTAGTTGGTACCCTTACAGGCACTTGCCGATTTTTTATTGCTTCAGGCAAATATTTCCAGCTTGAGGCACAAATTCGTGTTAATGGAAAGAAGAGAACTTCTGGCAACAAGATTACGGGCATTCAGTTTTCCCCGAAAAACCATCAGAGAATTATGATCACATCAGAAGATTCCAAAGTTAGAATATTAGAAGGCATTGAACTTGTTCAGACATACAAAGGCCTTCCAAAGTCGGGAAGTCAGATGTCTGGTTCATTCACGTCAACCGGAAAACATTTAATTTCAGTCGGAGACGACTCTCGTATTTATATATGGAACTTCAATGAGTTGGGAAATGCATCTTCCAAACACACAAAATCAAAGTATTCCTGCGAATACTTTTTCTCCAAGGGGGTCACCGTTGCAATACCTTGGTCAGGCATGACTGCAAACTCTTGCAATAATTCATCCGAAGTGCAACCAAAGTTAGAGGCCGTTCCCGGGGTTAGAGACTCAGAACGATTTTCTTTTCGCAGTTGGTTCTCATTAGATGGTACATGCCGAGGTTCTATGACATGGCCTGAGGAGAAGCTTCTCAGTTGGGATTTATCTTTCGCAGAAGATGAATTTGATTACAAACCGTTATGTGTTAAAGATCCTCGCCACGACAATTTTGTATCAGAAACATGGGGACTATCAATTGTGGCAGCTGGTTGTGATGGAACTATCAAAACATTCCACAACTTTGGATTACCTGTTAGGCTTTAA 1944 0.4079 MVISNGGHGDVFFDSVDCLSPPQECVLTKQELGYEVWMNEPLSVKERRESFLQEMGLVEVSSKVCLQEKMLSLGIERVKDCIVLDDRVPEKLVPSSEESSSEAQVFLDEFKGCQDHEDKEDRSFQGKVYEPSSSGQEHRDREAEAVEEFKEFEICKKNKKRWWERFVNGGKEGEGKDRSKLNRRTRKSNRIHVKQNKKKWMEFSAVYIGQEIRAHKGLIWTMKFSPNGKYLASGGEDGVIRIWRVLSLDTSGVCFSAHDSITREVKHDICSQRKNSSQSLKVLPKKILQIEESPLQEFYGHSGDVLDLAWSNSDILLSSSTDKTVRLWQIGYDECLNIFHHRDYVTCIQFNPVDENYFISGSIDGKVRIWGVHEERVVDWANIRDVISAISYQPDGKGFVVGTLTGTCRFFIASGKYFQLEAQIRVNGKKRTSGNKITGIQFSPKNHQRIMITSEDSKVRILEGIELVQTYKGLPKSGSQMSGSFTSTGKHLISVGDDSRIYIWNFNELGNASSKHTKSKYSCEYFFSKGVTVAIPWSGMTANSCNNSSEVQPKLEAVPGVRDSERFSFRSWFSLDGTCRGSMTWPEEKLLSWDLSFAEDEFDYKPLCVKDPRHDNFVSETWGLSIVAAGCDGTIKTFHNFGLPVRL 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0619 647 Pfam WD domain, G-beta repeat 293 328 IPR001680 GO:0005515
Lal4g0619 647 Pfam WD domain, G-beta repeat 211 243 IPR001680 GO:0005515
Lal4g0619 647 Pfam WD domain, G-beta repeat 334 370 IPR001680 GO:0005515
Lal4g0619 647 Gene3D - 199 536 IPR015943 GO:0005515
Lal4g0619 647 ProSiteProfiles Trp-Asp (WD) repeats profile. 298 338 IPR001680 GO:0005515
Lal4g0619 647 PRINTS G protein beta WD-40 repeat signature 231 245 IPR020472 -
Lal4g0619 647 PRINTS G protein beta WD-40 repeat signature 316 330 IPR020472 -
Lal4g0619 647 PRINTS G protein beta WD-40 repeat signature 358 372 IPR020472 -
Lal4g0619 647 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 212 245 - -
Lal4g0619 647 ProSiteProfiles Trp-Asp (WD) repeats profile. 212 245 IPR001680 GO:0005515
Lal4g0619 647 SMART WD40_4 291 329 IPR001680 GO:0005515
Lal4g0619 647 SMART WD40_4 427 463 IPR001680 GO:0005515
Lal4g0619 647 SMART WD40_4 332 371 IPR001680 GO:0005515
Lal4g0619 647 SMART WD40_4 373 412 IPR001680 GO:0005515
Lal4g0619 647 SMART WD40_4 205 244 IPR001680 GO:0005515
Lal4g0619 647 SMART WD40_4 464 505 IPR001680 GO:0005515
Lal4g0619 647 PANTHER WD REPEAT DOMAIN 44 3 647 IPR040324 -
Lal4g0619 647 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 338 370 - -
Lal4g0619 647 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 3 647 - -
Lal4g0619 647 ProSiteProfiles Trp-Asp (WD) repeats profile. 338 380 IPR001680 GO:0005515
Lal4g0619 647 SUPERFAMILY WD40 repeat-like 210 636 IPR036322 GO:0005515
Lal4g0619 647 MobiDBLite consensus disorder prediction 118 142 - -
Lal4g0619 647 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 298 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0619 Lal-Chr4 4568558 4578994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0619 201 504 Miscellaneous Gene Families AT5G08390 19.683 6.01e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0619 K20241 - gmx:100780979 915.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0619 4 4568558 4578994 Lal4g0619 4 4568558 4578994 ECH
Lal21g0657 21 5027501 5031230 Lal4g0619 4 4568558 4578994 LSH
Lal17g0727 17 5148346 5152072 Lal4g0619 4 4568558 4578994 LSH
Lal19g0936 19 13379921 13384245 Lal4g0619 4 4568558 4578994 PCT
Lal4g0619 4 4568558 4578994 Lal19g0936 19 13379921 13384245 PCT