Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0617 ATGAGTTTGACGGGTGCAGAAAGCTCAGAGGAGGGTACAGGGCTTCCGGAGCCTCCTGATCCTGATGTTGTTGAAATTGATCCTACTTCTCGCTATGTCAGGTACAAAGAAGTGCTTGGGAAAGGAGCCTTCAAGACTGTGTATCCATTATACAAGGCATTTGATGAAGTCAATGGACTTGAAGTTGCATGGAGCCAAATTCGGATCGATGAAGTATTACAATCACCATGTGACTTAGAGAGGCTATACTCAGAAGTGCATCTCTTGAAGTCATTAAAGCACAATAACATAATAAGGTTCTACAATTCATGGATTGATGACAAGCATAGGACTGTTAACATGATTACTGAGTTATTCACCTCTGGAAGCCTCAGACAATATCGGAAGAAACACAAGAAGGTTGACATGAAAGCTGTTAAAGGTTGGGCTAGACAGATTTTAATGGGTTTGAATTATCTCCATAGTCACAAACCACCAATTATACATAGGGACTTGAAGTGTGATAACATTTTCATAAATGGTCACCAAGGAGAAGTTAAAATTGGAGATTTGGGACTTGCAACTCTCTTGGAGCAGAATAATGCCAAGAGTGTAATCGGAACTCCTGAGTTTATGGCACCTGAACTGTATGATGAAGAATACAATGAATTAGCTGACATATATTCTTTTGGGATGTGTATGCTTGAGTTGGTAACGTTTGAGTATCCTTATAGAGAATGTAGAAATTCAGCTCAGATATACAAGAAAGTTTCAACAGTGAGTACTGGTGTAAAGCCTGTATCTCTTTCTAAAGTCAAAGATCCAGAAATAAAATTATTTATTGAGAAATGTCTCGTCCCTGCATCACAAAGATTGCCAGCAAGGGAGCTTTTGATGGACCCTTTTCTCCAAGTTAATGGATTAGCGAAGAATCGCTCTCTCCAATTACCGGATATTGTTCTTCCAAGATTGGGAGCATTTGAGAATCGCTGTCTGATGTCAGAGGGTCCTGCAAGTGCACGTAGTCGATCCATTTCGATTGATCTCAGTGACACTAGTGAGCTACCAATGATAACTGTATTTTATAATTCTGTGGAAGATGCACCACCTTCTCCATGTGTTGAGATACGAAGGGTGAAGGGAGGCGAAGAAAATGATGAGAACTCTGTATCGTTAGTCCTTCGGATAGCTGATCAAAATGTTATATACTCTAGGCGTGAAAATGCAGGACGAGCGAGAAATATACATTTCATGTTCTACCTCAATACTGATACTGCCATCTCGGTTTCAAGCGAAATGGTTGAACAACTTGAACTTGCTGAGCAGAATGTTAAATTCATAGCCGAGTCGTTAGATCTGTTATTGATGACTTTGATTCCTGATTGGAAACCTTGCATAGCAATTGAGCATTTGGTCGTTTCTCCAAATGATAAAAGAACTAATCTAATTCAACAGAAAGATTCAAAATCGTCACAGAAAGATTTAGAGCTGTCAAAATACAAAGAAAGCTTAGATGATGCTAGCCGAATTGTGGTAGAAGACGTAGGGCCCTCGACCTTGCCCGAAAGATTAGTAGTAAATGAAACCAATTATGATGTGATCTTTGATGAGGTTTTATCTCATGCAAGAATTGGTCTTCAAAGAGAAACAAAGCCAGATGATTTGTGTTCTGAGATGTCATACACTTCAGTACTATCTGACTTTGATGATGAGAATTCTTCTGCAGTTTCATTCACATCTGCTGAATCAGAATTTTCAGATTTCAACTCACCTACAATGAATGAAGGGACTCAAACATCATTTGCATCTGAAATAAAGGCATCAATTGACTATATGAACAACCTTCCAGAGATTTCAGGCAACGGTATATTGAACTACTCTACTAATCATCCAAACACTACTTCTGAGCTTGATTCAAGCATAGAATTAGAAATGATTGATCAACAATATCAAGAGGCAATTAAAGAACTATCAAAAAGAAGACATCAAGCCATCATTGAGACTAGAAGGAGGTTGTCAAATAATATGACATCATAG 2016 0.3859 MSLTGAESSEEGTGLPEPPDPDVVEIDPTSRYVRYKEVLGKGAFKTVYPLYKAFDEVNGLEVAWSQIRIDEVLQSPCDLERLYSEVHLLKSLKHNNIIRFYNSWIDDKHRTVNMITELFTSGSLRQYRKKHKKVDMKAVKGWARQILMGLNYLHSHKPPIIHRDLKCDNIFINGHQGEVKIGDLGLATLLEQNNAKSVIGTPEFMAPELYDEEYNELADIYSFGMCMLELVTFEYPYRECRNSAQIYKKVSTVSTGVKPVSLSKVKDPEIKLFIEKCLVPASQRLPARELLMDPFLQVNGLAKNRSLQLPDIVLPRLGAFENRCLMSEGPASARSRSISIDLSDTSELPMITVFYNSVEDAPPSPCVEIRRVKGGEENDENSVSLVLRIADQNVIYSRRENAGRARNIHFMFYLNTDTAISVSSEMVEQLELAEQNVKFIAESLDLLLMTLIPDWKPCIAIEHLVVSPNDKRTNLIQQKDSKSSQKDLELSKYKESLDDASRIVVEDVGPSTLPERLVVNETNYDVIFDEVLSHARIGLQRETKPDDLCSEMSYTSVLSDFDDENSSAVSFTSAESEFSDFNSPTMNEGTQTSFASEIKASIDYMNNLPEISGNGILNYSTNHPNTTSELDSSIELEMIDQQYQEAIKELSKRRHQAIIETRRRLSNNMTS 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0617 671 ProSiteProfiles Protein kinase domain profile. 33 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal4g0617 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Lal4g0617 671 MobiDBLite consensus disorder prediction 1 25 - -
Lal4g0617 671 SUPERFAMILY Protein kinase-like (PK-like) 35 352 IPR011009 -
Lal4g0617 671 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK6-RELATED 5 668 - -
Lal4g0617 671 CDD STKc_WNK 31 296 - -
Lal4g0617 671 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 383 445 IPR024678 GO:0004674|GO:0005524
Lal4g0617 671 Pfam Protein kinase domain 35 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal4g0617 671 Gene3D Transferase(Phosphotransferase) domain 1 119 302 - -
Lal4g0617 671 Gene3D Phosphorylase Kinase; domain 1 19 117 - -
Lal4g0617 671 Gene3D - 366 451 - -
Lal4g0617 671 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 5 668 - -
Lal4g0617 671 SMART serkin_6 33 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0617 Lal-Chr4 4548997 4552482 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0617 136 485 MAP Kinase Kinase Kinase AT1G49160 63.866 5.10e-158 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Lal4g0617 Pkinase 1.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0617 K08867 - gmx:121175054 853.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0617 4 4548997 4552482 Lal4g0617 4 4548997 4552482 ECH
Lal14g1367 14 15076493 15079895 Lal4g0617 4 4548997 4552482 PCT
Lal4g0617 4 4548997 4552482 Lal14g1367 14 15076493 15079895 PCT