Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0616 ATGTATGCTTCTACTTCCTTCACTTCACCCATTCTCCATGATCTTCTTCTTGAGGATTTCAACTCAAGAAGGTTACTCCATCCATCGTTTAAATCACTCAACTCAGCTAACCCTCCAGCTTCCACAAACATACAAAAATCAACAGAATCTGGTAATTTTGATGCAAATATTGTTATGGTACTCTCAGTTCTACTTTGTGCTCTAATTTTCTCACTTGGGTTGAACACCATCATAAGATGTGCATTAAGGTGTTCTAATTTAGTTCCACCAAACACTACCCCTTATCCTCCAACTAGAGTATCCAACAAAGGAATAAAGAAGAAAGCACTCAAGACTTTCACTACAGTAAGTTACTCAGCTGAGTTAAACCTTCCAAGTTTGGACTCAGAATGTGTAATATGCCTCTCAGAGTTCACAAATGGTGATAAGGTTCGAATTTTGCCTAAGTGTAACCATGGTTTTCATGTACGCTGCATTGACAAATGGCTAAGTTCACATTCTTCTTGCCCTAAGTGTAGACAGTGCCTAATTGAGACTTGTGAAAAAATTATTGGGTGCAACACTAGGCAAGGTAGTTTAACCCAACCACCTATGTTGCTAGTGCCAGAAACTGTTGTAACCATAGTGCCATTAGAGCCAGAAGGTTTGGTTCGTAATTATAGGGAAGTTATTAGTTAA 678 0.3864 MYASTSFTSPILHDLLLEDFNSRRLLHPSFKSLNSANPPASTNIQKSTESGNFDANIVMVLSVLLCALIFSLGLNTIIRCALRCSNLVPPNTTPYPPTRVSNKGIKKKALKTFTTVSYSAELNLPSLDSECVICLSEFTNGDKVRILPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIETCEKIIGCNTRQGSLTQPPMLLVPETVVTIVPLEPEGLVRNYREVIS 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0616 225 Pfam Ring finger domain 130 173 IPR001841 -
Lal4g0616 225 PANTHER RING-H2 FINGER PROTEIN ATL78 1 223 IPR044602 GO:0016567|GO:0016740
Lal4g0616 225 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 223 - -
Lal4g0616 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 177 IPR013083 -
Lal4g0616 225 CDD RING-H2_PA-TM-RING 130 173 - -
Lal4g0616 225 SUPERFAMILY RING/U-box 110 178 - -
Lal4g0616 225 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Lal4g0616 225 SMART ring_2 131 172 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0616 Lal-Chr4 4538163 4538840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0616 24 182 C3H Transcription Factor Family AT1G76410 43.210 1.18e-37 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0616 K19040 - gmx:100807227 315.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0724 17 5117173 5117862 Lal4g0616 4 4538163 4538840 LSH
Lal14g1363 14 15062742 15063416 Lal4g0616 4 4538163 4538840 PCT
Lal7g0808 7 14823609 14824630 Lal4g0616 4 4538163 4538840 PCT
Lal19g0932 19 13311265 13311933 Lal4g0616 4 4538163 4538840 PCT
Lal4g0616 4 4538163 4538840 Lal14g1363 14 15062742 15063416 PCT
Lal4g0616 4 4538163 4538840 Lal7g0808 7 14823609 14824630 PCT
Lal4g0616 4 4538163 4538840 Lal19g0932 19 13311265 13311933 PCT