Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0610 ATGGATTCGGAGGAATTCCGTTCCATATTGGAAACTTCGGGCGTTGACGTGTGGTCGTTAATTGACACCGCAATCGTCGTCGCTGCGACGGATTCCGGCGAGGAGCTGAAGCGCCGGAGGGACGCAATCGTTGAGAGGCTCTATTCTACCGCCGCTGTTCCTCCGCGGTGCCGGAATTGTGACGGCTTTGTTGGCGGCGGGAACTGTAGCGGTGTCACCACCAACGGCTACGAAGTTAAGAAACAACAGAGAAGCCCTAGCCCTAAACGACAGCCACCACAACGCGAGCAACAACGTCGTTTTGCATCTTCCCCCGAAACGCCACAGTCTCTTGAAAACGACGACGACGACGAAAACGAGAACGATTTAGATCGTTACGGTGGTTTGTTCGATGATGAACAGAAGAAAATCCTTGAAATTAAAGATCAACTCGAAGAACCTGATCAGTCTGAAGATTCATTAGTGGATTTGCTTCAAAATCTCGCGGATATGGATATTACATTCCAAGCTCTGAAGGAAACTGACATTGGGAGGCACGTGAATCAGTTGAGGAAGCATTCCTCTAATGACGTTCGCAGATTGGTGAAGCTACTTGTAAAGAAGTGGAAGGAAATTGTGGATGAGTGGGTGAAGTCCAATCCATTGGGAGAAACTGCTACTACTCTTATGACTGATGGAGACTCTCCTCCTCTTATGAAAACCACCCAAAATGGGCATCATCAGATTCCTGATTTTGCTTACTCGCCGAATCCACACAATGGGAGTTCTGGGTCTGACCGCAATGAAGCAGAACTGAAACCAAAAGTGATTCCTCATCACAGAGAAGCAGCACCTCCAAAATCAACTCCGCCATTAGTTCATACCCCTGCTCATGCTTCCCTTCAAAATAGACAGAGAGAATCAAGAGAGAGCAATTTTGATGCTGAGAGACTTGCTTCTGCAAGAAAAAGGCTTCAAGCGAACTATAAAGAAGCTGAAAACGCCAAAAAGCAAAGGACGATTCAGGTGATGGATATTCATGAGTTACCAAAGTCAAAATCCAAGAATACCTTCTTTGGAAAGAACAAAGGCAGTGGCGGTTCTCAAGGGAGGCACTGGTGA 1101 0.4705 MDSEEFRSILETSGVDVWSLIDTAIVVAATDSGEELKRRRDAIVERLYSTAAVPPRCRNCDGFVGGGNCSGVTTNGYEVKKQQRSPSPKRQPPQREQQRRFASSPETPQSLENDDDDENENDLDRYGGLFDDEQKKILEIKDQLEEPDQSEDSLVDLLQNLADMDITFQALKETDIGRHVNQLRKHSSNDVRRLVKLLVKKWKEIVDEWVKSNPLGETATTLMTDGDSPPLMKTTQNGHHQIPDFAYSPNPHNGSSGSDRNEAELKPKVIPHHREAAPPKSTPPLVHTPAHASLQNRQRESRESNFDAERLASARKRLQANYKEAENAKKQRTIQVMDIHELPKSKSKNTFFGKNKGSGGSQGRHW 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0610 366 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 134 214 IPR035441 -
Lal4g0610 366 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 366 - -
Lal4g0610 366 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 131 217 IPR035441 -
Lal4g0610 366 MobiDBLite consensus disorder prediction 224 308 - -
Lal4g0610 366 MobiDBLite consensus disorder prediction 77 128 - -
Lal4g0610 366 MobiDBLite consensus disorder prediction 77 109 - -
Lal4g0610 366 SMART TFS2_5 137 208 IPR003617 GO:0005634
Lal4g0610 366 MobiDBLite consensus disorder prediction 259 275 - -
Lal4g0610 366 MobiDBLite consensus disorder prediction 224 258 - -
Lal4g0610 366 Pfam TFIIS helical bundle-like domain 157 206 IPR017923 -
Lal4g0610 366 Coils Coil 308 335 - -
Lal4g0610 366 ProSiteProfiles TFIIS N-terminal domain profile. 132 209 IPR017923 -
Lal4g0610 366 CDD TFIIS_I 134 207 - -
Lal4g0610 366 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 366 IPR044790 -
Lal4g0610 366 MobiDBLite consensus disorder prediction 340 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0610 Lal-Chr4 4473640 4476967 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lal4g0610 Med26 1.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0610 - - aip:107622503 476.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0610 4 4473640 4476967 Lal4g0610 4 4473640 4476967 ECH
Lal21g0650 21 4970222 4973481 Lal4g0610 4 4473640 4476967 ECH
Lal17g0707 17 4996202 5000646 Lal4g0610 4 4473640 4476967 LSH
Lal21g0650 21 4970222 4973481 Lal4g0610 4 4473640 4476967 LSH
Lal7g0801 7 14792722 14794642 Lal4g0610 4 4473640 4476967 PCT
Lal19g0926 19 13274483 13276975 Lal4g0610 4 4473640 4476967 PCT
Lal4g0610 4 4473640 4476967 Lal7g0801 7 14792722 14794642 PCT
Lal4g0610 4 4473640 4476967 Lal19g0926 19 13274483 13276975 PCT