Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0606 ATGCTTATGAATAATCCTAGAGACAAAGGAAACAAGGTTATTGAGAAGAGAGAAATGGATGAAGGGGTAAACAATTCAACATTAATAATGCCAATGATCAAATTTCCAGGTATGAATAGAGAGAAGGAGATGTCAGCTATGGTAACAGCTTTGACACACGTGGTGGCCGGAGACGTGCCAAGTGGCGGTGATCATTATATAATTCATCAACCAAGAATAGTTGGTGCAATAATTGAAGGGGGTAGTGATGTTAATGTTAAACCAAACATTGTTTCTTCTGCTTCTTCAACACCTTCTTTGATTTCTTCTTCAAATTATATTGGTAGTTCTGCTCTTAAGAGAAATAGAGAAGATGATGATAGATTCTTTGGTCATGATTTCTCACATGGTGCTTCATCTCCTGCTATTCAAACAAATACAGAAAGTTCAAACAATTGGAACAGCACAACAACAACAGTTGAAATGGGAAACAATCCAATATATGAATACAGAGCAACAAACAACATTGTGAGAGAAGAAGAACCAAGGAGAAAATACAGAGGAGTGAGACAGAGACCATGGGGAAAATGGGCTGCAGAAATAAGAGACCCATTCAAAGCAGCAAGAGTATGGTTAGGCACATTTGACACAGCAGAATCAGCTGCAAGAGCCTATGATGAAGCTGCACTTCGTTTCAGAGGCAACAAAGCAAAACTCAACTTCCCTGAAAATGTTACACTAAGACAACAACATCAACAACAACAACAACCTTTTCATAATAACCCTTCTCCTCTGGCCACACAATGGAACACTTCAAATGCTGATACTAACACTACTTCATTTGTGTCTATTCCAACTTCCACTGAACCTATTGTTCACACTGAACTTCTTCATCGCTCTTTGCATGGTTCAAGTTCAAGCAATTTTTATGATTATTATCAGCTTTCAGATTATCATTCTGCCATGAATTTATATGATGATAAGAATATGGTTATGGTATCTACAATGGCTTCTAATATTCAATCTTCTACGTCATTGTCACTAGCTTCTTCATCTTCATCTTCTTCACAGACGAGTACACTTCCTTGGCTTTATTCCAAGTCCAACCAGTTACCGGCATGGTCAGCTTCCGGTCATAACTCTTCTTCTTCAGGATGA 1137 0.3817 MLMNNPRDKGNKVIEKREMDEGVNNSTLIMPMIKFPGMNREKEMSAMVTALTHVVAGDVPSGGDHYIIHQPRIVGAIIEGGSDVNVKPNIVSSASSTPSLISSSNYIGSSALKRNREDDDRFFGHDFSHGASSPAIQTNTESSNNWNSTTTTVEMGNNPIYEYRATNNIVREEEPRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAESAARAYDEAALRFRGNKAKLNFPENVTLRQQHQQQQQPFHNNPSPLATQWNTSNADTNTTSFVSIPTSTEPIVHTELLHRSLHGSSSSNFYDYYQLSDYHSAMNLYDDKNMVMVSTMASNIQSSTSLSLASSSSSSSQTSTLPWLYSKSNQLPAWSASGHNSSSSG 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0606 378 MobiDBLite consensus disorder prediction 123 153 - -
Lal4g0606 378 CDD AP2 178 237 IPR001471 GO:0003700|GO:0006355
Lal4g0606 378 SMART rav1_2 178 241 IPR001471 GO:0003700|GO:0006355
Lal4g0606 378 Gene3D AP2/ERF domain 177 237 IPR036955 GO:0003700|GO:0006355
Lal4g0606 378 PANTHER DNA-BINDING DOMAIN 3 371 IPR044808 GO:0003700|GO:0009873
Lal4g0606 378 SUPERFAMILY DNA-binding domain 178 236 IPR016177 GO:0003677
Lal4g0606 378 MobiDBLite consensus disorder prediction 131 153 - -
Lal4g0606 378 Pfam AP2 domain 178 227 IPR001471 GO:0003700|GO:0006355
Lal4g0606 378 PRINTS Ethylene responsive element binding protein signature 179 190 IPR001471 GO:0003700|GO:0006355
Lal4g0606 378 PRINTS Ethylene responsive element binding protein signature 201 217 IPR001471 GO:0003700|GO:0006355
Lal4g0606 378 ProSiteProfiles AP2/ERF domain profile. 178 235 IPR001471 GO:0003700|GO:0006355
Lal4g0606 378 PANTHER DNA-BINDING DOMAIN PROTEIN 3 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0606 Lal-Chr4 4432565 4434528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0606 186 293 AP2-EREBP Transcription Factor Family AT5G64750 61.111 1.88e-34 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal4g0606 AP2 2.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0606 - - lang:109338199 563.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0606 4 4432565 4434528 Lal4g0606 4 4432565 4434528 ECH