Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0578 ATGGCAATTGCAACAACCTCTGCTATCTCTCTTCTCTTCTTTGTTCTTAATCTATGCCTTCAACCAACTTTTGGTTACTATGGTGGTGGTTGGGAAGGTGGTCATGCTACATTTTATGGTGGTGGAGATGCATCTGGCACAATGGGAGGGGCTTGTGGTTATGGAAATTTATACAGCCAAGGTTATGGTACTAACACTGCAGCACTTAGCACTGCTTTATTCAACAATGGATTGAGTTGTGGATCTTGCTATGAGATGAAATGTGACAATGATGCTAAATGGTGTCTCCCTGGTACCATCATTGTTACTGCCACAAACTTCTGCCCTCCTAACTTTGCTTTGTCTAATGACAATGGTGGTTGGTGCAATCCTCCACTTCAGCATTTTGATCTTGCTGAGCCTGCTTTCTTACAAATTGCTCAATATAAAGCTGGAATTGTTCCTGTTTCCTTCAGAAGAGTATCCTGTGTGAAGAAAGGAGGAATGAGGTTCACAATCAATGGCCACTCTTACTTCAACTTGGTTCTGATCTCGAATGTCGGTGGCGCCGGAGATGTTCATTCTGTTTCTATCAAAGGTTCTAGAACTGGATGGCAAGCTATGTCAAGGAACTGGGGCCAGAACTGGCAGAGTAACTCATATCTCAATGGCCAAAGCCTCTCATTCCAAGTAACTACAAGTGATGGAAGAACTATTACTAGCAACAATGTTGTTCCTTCTAATTGGCAATTTGGACAAACATTTCAGGGAGGACAGTTTTAG 762 0.4252 MAIATTSAISLLFFVLNLCLQPTFGYYGGGWEGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCDNDAKWCLPGTIIVTATNFCPPNFALSNDNGGWCNPPLQHFDLAEPAFLQIAQYKAGIVPVSFRRVSCVKKGGMRFTINGHSYFNLVLISNVGGAGDVHSVSIKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTITSNNVVPSNWQFGQTFQGGQF 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0578 253 Pfam Lytic transglycolase 66 151 IPR009009 -
Lal4g0578 253 SUPERFAMILY Barwin-like endoglucanases 30 179 IPR036908 -
Lal4g0578 253 SMART dpbb_1 66 151 IPR007112 -
Lal4g0578 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 161 IPR007112 -
Lal4g0578 253 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Lal4g0578 253 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Lal4g0578 253 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Lal4g0578 253 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Lal4g0578 253 PRINTS Expansin signature 136 149 IPR002963 GO:0009664
Lal4g0578 253 PRINTS Expansin signature 160 172 IPR002963 GO:0009664
Lal4g0578 253 PRINTS Expansin signature 172 193 IPR002963 GO:0009664
Lal4g0578 253 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Lal4g0578 253 PRINTS Expansin signature 236 252 IPR002963 GO:0009664
Lal4g0578 253 PANTHER EXPANSIN 5 253 - -
Lal4g0578 253 Gene3D - 21 156 IPR036908 -
Lal4g0578 253 PANTHER EXPANSIN-A15 5 253 IPR002963 GO:0009664
Lal4g0578 253 Pfam Expansin C-terminal domain 162 239 IPR007117 -
Lal4g0578 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 171 250 IPR007117 -
Lal4g0578 253 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Lal4g0578 253 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Lal4g0578 253 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Lal4g0578 253 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576
Lal4g0578 253 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576
Lal4g0578 253 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Lal4g0578 253 SUPERFAMILY PHL pollen allergen 158 250 IPR036749 -
Lal4g0578 253 Gene3D - 161 253 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0578 Lal-Chr4 4211479 4213699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0578 1 253 Expansin Gene Family AT2G40610 81.102 2.34e-149 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0578 K20628 - gmx:547673 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0667 17 4719945 4721613 Lal4g0578 4 4211479 4213699 LSH
Lal21g0628 21 4730972 4732655 Lal4g0578 4 4211479 4213699 LSH