Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0577 ATGTCGTTTCCATTTCACCACCGTCGATCTCAATCGGAGGTACATTTCCGAATCCCCGACGACTTCGATCTCCAACTCGATCCCTTCGATGCACCATCGCTCCATTTCCAAGATCCCGTTCCATCTCACCACGACGATCTTCTCTCCGCTTACATTGACTCTGACAATTCCGGATCCAATGTTCAACCCTCCGCCACCGCACCGAAACCGGAGGATGCCGGTGATGGAACCTGCAACACGTCGAGTAGCAAAACCGGAAGAGCCGGTCATCGGAGAAGCAACTCTGTGGATGGGTCTTCGTCTTCGTTGATGGAAGGGATTGAGGCGAAGAAGGCCATGCCACCTGATAAGCTCGCTGAATTGTGGACCGTTGATCCCAAACGAGCCAAGAGGCAGTGTGACAATCCTGTAGCAGTGGTATGTGGTTCTGCAAATGCTGGCTGGCTATGCCATGTCTTGTCACTATCATTTTTCCCTCAGTTGGGTTGTGACCTTATGAGTTGGTCGGCTTGTGACCGGATTCTGGCCAATCGCCAATCTGCTGCGCGCTCCAAAGAAAGAAAGGCTGGTTATGTGTCGGAGCTTGAAAGAAAAATTCAAACTCTTCAAACTGAGGCGACTACTCTCTCAGCTCAATTAAATCTCTTCCAGAGAGATACAAATGGTCTGTGTTCTGAAAATACTGAGCTTAAGCTTCGGTTACAATCAATGGAGCAACAAGCCAAGTTATGTGATGCTCTAAATGAAGCACTGAAGAAAGAAGTTGATAGGCTCAAGATGGCTACTGGAGAGACAGTAATGCATGCTGATACCTACAGTTTTGGAATGCATCAATTTTCATATTCTCCAACTCCATTCTTCTCACATCAGCCACAACAGTGGCCGGGCAGGCTTCACACCATGCAAATGCCACAGATGCATGCACTCTCATCTAATATGTCGACTCCCCATCGGCCTATGCTTGATCCAGCCACTACATATGATTTGTCAGAAATGTTACCGAGTGATTCTATCGGCCAATTTCAGGGTCTGGACATAAGCCACGGGGCTTCTCACAATTTGATGCCTGATAGTCCCTCCATTTCTGTTAATAAAATCAACAATGCCTTTTGA 1113 0.4762 MSFPFHHRRSQSEVHFRIPDDFDLQLDPFDAPSLHFQDPVPSHHDDLLSAYIDSDNSGSNVQPSATAPKPEDAGDGTCNTSSSKTGRAGHRRSNSVDGSSSSLMEGIEAKKAMPPDKLAELWTVDPKRAKRQCDNPVAVVCGSANAGWLCHVLSLSFFPQLGCDLMSWSACDRILANRQSAARSKERKAGYVSELERKIQTLQTEATTLSAQLNLFQRDTNGLCSENTELKLRLQSMEQQAKLCDALNEALKKEVDRLKMATGETVMHADTYSFGMHQFSYSPTPFFSHQPQQWPGRLHTMQMPQMHALSSNMSTPHRPMLDPATTYDLSEMLPSDSIGQFQGLDISHGASHNLMPDSPSISVNKINNAF 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0577 370 Coils Coil 234 254 - -
Lal4g0577 370 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 6 132 - -
Lal4g0577 370 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 172 366 - -
Lal4g0577 370 MobiDBLite consensus disorder prediction 35 102 - -
Lal4g0577 370 SMART brlzneu 165 229 IPR004827 GO:0003700|GO:0006355
Lal4g0577 370 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 173 230 IPR004827 GO:0003700|GO:0006355
Lal4g0577 370 Gene3D - 172 220 - -
Lal4g0577 370 Pfam bZIP transcription factor 173 224 IPR004827 GO:0003700|GO:0006355
Lal4g0577 370 MobiDBLite consensus disorder prediction 52 66 - -
Lal4g0577 370 SUPERFAMILY Leucine zipper domain 172 220 IPR046347 GO:0003700|GO:0006355
Lal4g0577 370 CDD bZIP_plant_RF2 172 219 IPR044759 GO:0003700|GO:0006355
Lal4g0577 370 PANTHER BZIP TRANSCRIPTION FACTOR 18 172 366 - -
Lal4g0577 370 PANTHER BZIP TRANSCRIPTION FACTOR 18 6 132 - -
Lal4g0577 370 Coils Coil 192 219 - -
Lal4g0577 370 MobiDBLite consensus disorder prediction 75 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0577 Lal-Chr4 4200310 4205164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0577 6 347 bZIP Transcription Factor Family AT2G40620 45.628 4.82e-75 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lal4g0577 bZIP_1 5.6e-07 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0577 - - gmx:100807712 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0665 17 4705101 4709333 Lal4g0577 4 4200310 4205164 LSH
Lal21g0627 21 4714741 4720109 Lal4g0577 4 4200310 4205164 LSH