Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0574 ATGGCTACTAATGGTGTGGATCCATGTTCTTCTGAAGCTTTTAGCATTTCACCTACTTCTGAAGATGGAAAGATGAACCTGAAAGAGAAGGGTGTCAAATCTGAACAAGAACAAGCTTCAATAATCTCCAATAACACCCCATCACAGCTTTTGGATTTCATGAAGCTTAATTCCAATGGTGACTTGGTTAGTGATTCAAAGGTGGAACTTGATTTATTCAACCAAACAGGTAATAATAACAACATGGTTGGTTCATCTTCTAGGGTTAATAATAATAATAACAATAACAATAACACTGCTGAAGGCACTGATGAAAACACAAAGAATGAGGTAAAGTCTTTCTCATGCAATTTTTGCAAGAGAGAGTTCTCTTCCTCACAAGCTTTAGGAGGACACCAAAACGCGCATAAACAAGAGCGCGCTCTCGCGAAACGACGACAAGGCCTTGATGCTAGTGGTGGTTTTGGTCACCCTTATTACCCTTCTTATCCAACCCTTTCAACTCATTCCTTTTATGGATCTTACAATAGGGCACTCGGTATTCGAATGGATTCCATGATTCACAAGCCTTCTTACCCTTCTTGGGCATCACCCAATGGAGTAAGGTATGGTAGTAGCCCTTGGTTTAGACAAGGAGGCCAAGAAATAATGAGTTCTTCAACATCATCACCACTTGATAGGTTAAGAATTGAGGGTTTGCAATTGCAATCACATGGTGATAGTGGTAGTGGACTTGGATTTTTGGGAGGAAGTGATGCAAGTTCAAGGCTAGAGGATAATGATGGTAATAATGTTGGAACACTTTCTCTTTCAAAAAATATTGCTACCACTTCATCAATTCAAGTCATGAATAAACCAATTCAATCAACAGTGTTTGATCCTCCTCCTCCTCCTCCACTAGGAATTTCTAGAGGAGAATCTTCTGATGATCTTGATTTGTCACTTAAGCTTTAG 954 0.3952 MATNGVDPCSSEAFSISPTSEDGKMNLKEKGVKSEQEQASIISNNTPSQLLDFMKLNSNGDLVSDSKVELDLFNQTGNNNNMVGSSSRVNNNNNNNNNTAEGTDENTKNEVKSFSCNFCKREFSSSQALGGHQNAHKQERALAKRRQGLDASGGFGHPYYPSYPTLSTHSFYGSYNRALGIRMDSMIHKPSYPSWASPNGVRYGSSPWFRQGGQEIMSSSTSSPLDRLRIEGLQLQSHGDSGSGLGFLGGSDASSRLEDNDGNNVGTLSLSKNIATTSSIQVMNKPIQSTVFDPPPPPPLGISRGESSDDLDLSLKL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0574 317 MobiDBLite consensus disorder prediction 285 317 - -
Lal4g0574 317 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 20 317 - -
Lal4g0574 317 Gene3D Classic Zinc Finger 89 152 - -
Lal4g0574 317 MobiDBLite consensus disorder prediction 1 22 - -
Lal4g0574 317 MobiDBLite consensus disorder prediction 1 39 - -
Lal4g0574 317 ProSitePatterns Zinc finger C2H2 type domain signature. 116 136 IPR013087 -
Lal4g0574 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 114 141 IPR013087 -
Lal4g0574 317 PANTHER ZINC FINGER PROTEIN JAGGED 20 317 IPR045320 GO:0003700
Lal4g0574 317 MobiDBLite consensus disorder prediction 79 106 - -
Lal4g0574 317 SUPERFAMILY beta-beta-alpha zinc fingers 112 141 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0574 Lal-Chr4 4171330 4172283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0574 107 210 C2H2 Transcription Factor Family AT5G10970 52.336 7.52e-25 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal4g0574 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0574 - - lang:109326376 481.1