Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0569 ATGGAGAAAGATTTGTTGGAATTGTACGAAGCTGTGCACAAGGCGGCTGATGCGGCGAGCTCCGGCGACGGAGAACCTGAAGAAAGTAGATGCATTGATGCGCTTGAACATCTCAAGAAATTTCCTGTTAATTACAAGATTCTCGTCAGCACCCAGGTGGGTAAACATCTTAAGTCTCTGACGAAGCATCCAAAGCCGAAAATCCGCGCCTTTGCTATCGGCCTAATTGAGATATGGAAAGACTTAATCATTAAGGAAACAAGCAAAAATAAGAATGGTGGCTCTGATATTAAGGTTGAGCCTACCAATGGGGAGAGAGCTAAAGCTGGGAAATTTCAAAAGAGTCCTTCGGTGAAGACTGAAACTGTCAAGGTTGAGAAAATTGATAGGAATGGTACACCAAGGTCAAGTTCAGACAGTACAAAGAAGGCACAAAATGTGGATATCAGAATTGAGAAAACTGATGGTGCTGCAAATGGTAAGGTGGAGAAGCAAGTTTCCGGGGTGAAGAGAACGCCGTCCATCTCGGCTGCTCCTCCGAAGCTAAAGGCTATGATTAAATCTAATGATTCGGTTCGAGACAAAATACGAGAACTTCTCCAAGAGGCTTTATCAAAGGTTCCTGAAGAGGCTGATGAAGATGAAATGGATGAAGTTAATGCATGCGACCCTATTCGTGTTGCTGTGACAGTGGAGTCTCTGTTATTTGAGAAATGGGGTCCTTCTAATGGAGCTCAAAAGGTCAAGTATAGGTCCTTAATGTTTAACCTTAAGGATCAAAATAACCCGGATTTCCGGAGAAAAGTTCTGCTCGGTGTTATCGAGCCGGAGCGATTGATCAACATGAGCACAGCTGAAATGGCGAGCGAGCGAAGGAAACAGGAAAATAAGAAACTTGAACAGAAAGCTTTGTTTGAATGCGAGCGCGGAGCTCAACCAAAAGCCACAACTGATCAATTTAAGTGTGGTCGATGTGGTCAAAGGAAGACCACCTATTACCAAATGCAGACTCGCAGTGCTGATGAACCTATGACAACCTATGTCACTTGTGTTGTCTGCAATAACCGTTGGAAGTTTTGTTAG 1083 0.4386 MEKDLLELYEAVHKAADAASSGDGEPEESRCIDALEHLKKFPVNYKILVSTQVGKHLKSLTKHPKPKIRAFAIGLIEIWKDLIIKETSKNKNGGSDIKVEPTNGERAKAGKFQKSPSVKTETVKVEKIDRNGTPRSSSDSTKKAQNVDIRIEKTDGAANGKVEKQVSGVKRTPSISAAPPKLKAMIKSNDSVRDKIRELLQEALSKVPEEADEDEMDEVNACDPIRVAVTVESLLFEKWGPSNGAQKVKYRSLMFNLKDQNNPDFRRKVLLGVIEPERLINMSTAEMASERRKQENKKLEQKALFECERGAQPKATTDQFKCGRCGQRKTTYYQMQTRSADEPMTTYVTCVVCNNRWKFC 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0569 360 SMART TFS2_5 8 85 IPR003617 GO:0005634
Lal4g0569 360 Gene3D - 171 288 IPR036575 GO:0006351
Lal4g0569 360 Coils Coil 282 302 - -
Lal4g0569 360 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 360 - -
Lal4g0569 360 ProSiteProfiles Zinc finger TFIIS-type profile. 318 358 IPR001222 GO:0003676|GO:0006351|GO:0008270
Lal4g0569 360 Gene3D - 289 360 - -
Lal4g0569 360 MobiDBLite consensus disorder prediction 90 148 - -
Lal4g0569 360 Pfam Transcription factor S-II (TFIIS), central domain 189 306 IPR003618 GO:0006351
Lal4g0569 360 TIGRFAM TFSII: transcription elongation factor S-II 16 360 IPR006289 GO:0003676|GO:0005634|GO:0006368
Lal4g0569 360 SMART Cys4_2 320 359 IPR001222 GO:0003676|GO:0006351|GO:0008270
Lal4g0569 360 SMART mid_6 190 298 IPR003618 GO:0006351
Lal4g0569 360 ProSiteProfiles TFIIS N-terminal domain profile. 1 86 IPR017923 -
Lal4g0569 360 SUPERFAMILY Zinc beta-ribbon 300 358 - -
Lal4g0569 360 SUPERFAMILY Elongation factor TFIIS domain 2 177 290 IPR036575 GO:0006351
Lal4g0569 360 CDD Zn-ribbon_TFIIS 313 359 - -
Lal4g0569 360 CDD TFIIS_I 9 83 - -
Lal4g0569 360 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 5 96 IPR035441 -
Lal4g0569 360 Coils Coil 182 202 - -
Lal4g0569 360 PANTHER TRANSCRIPTION ELONGATION FACTOR TFIIS 1 360 - -
Lal4g0569 360 Pfam Transcription factor S-II (TFIIS) 320 358 IPR001222 GO:0003676|GO:0006351|GO:0008270
Lal4g0569 360 Pfam TFIIS helical bundle-like domain 34 83 IPR017923 -
Lal4g0569 360 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 96 IPR035441 -
Lal4g0569 360 ProSitePatterns Zinc finger TFIIS-type signature. 322 357 IPR001222 GO:0003676|GO:0006351|GO:0008270
Lal4g0569 360 ProSiteProfiles TFIIS central domain profile. 192 315 IPR003618 GO:0006351
Lal4g0569 360 PIRSF TFIIS 2 360 IPR035100 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0569 Lal-Chr4 4122539 4126083 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lal4g0569 TFIIS_M 2.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0569 K03145 - gmx:100811982 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0569 4 4122539 4126083 Lal4g0569 4 4122539 4126083 ECH