Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0563 ATGAATTGTGAGCCCATCAGTAGTTTAGCCCATCAGCTCAAAGCCCGCTTTAGGTTTCGGCCGAAAAAAGCCCACCCATCACAGAAACGACCTGCTAGGTGTTATAGGCAGATTAAGAACAAGCCATACCCAAAATCACGTTTCTGCCGTGGTGTTCCTGATCCCAAGATCAGGATCTATGATGTTGGAATGAAGAAGAAAGGTGTTGATGAGTTTCCTTTCTGTGTCCATCTGGTTAGTTGGGAGAAGGAGAATGTTTCAAGCGAAGCATTGGAAGCTGCTAGGATTGCATGCAACAAGTATATGACAAAGTTTGCTGGAAAGGATGCTTTCCACTTGCGTGTCAGGGTACATCCATTCCATGTGCTTAGGATCAACAAAATGCTTTCATGTGCCGGAGCTGATAGGCTTCAAACTGGAATGAGAGGTGCTTTCGGAAAGCCACAGGGTGTATGTGCTAGGGTGGCCATTGGTCAGGTTCTTCTTTCTGTCCGCTGCAAGGACAATAACAGCCATAATGCACAAGAAGCCCTCCGTCGTGCCAAGTTCAAGTTCCCTGGTCGTCAAAAGATTATTGTCAGCAGGAAGTGGGGTTTCACCAAGTTCAATCGTTCTGATTATCTGAGGTACAAGTCAGAGGGCAGAATTTTGGCTGATGGTGTCAATGCTAAGCTTCTTGGGTGCCATGGATCTTTGTCAAAACGTCAACCTGGACAGGCTTTCATTGACAGTGCTACCGCTTAG 744 0.4651 MNCEPISSLAHQLKARFRFRPKKAHPSQKRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDNNSHNAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRSDYLRYKSEGRILADGVNAKLLGCHGSLSKRQPGQAFIDSATA 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0563 247 PANTHER 60S RIBOSOMAL PROTEIN L10 29 244 IPR001197 GO:0003735|GO:0005840|GO:0006412
Lal4g0563 247 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 29 244 - -
Lal4g0563 247 CDD Ribosomal_L16_L10e 67 192 IPR016180 GO:0003735|GO:0005840|GO:0006412
Lal4g0563 247 ProSitePatterns Ribosomal protein L10e signature. 134 155 IPR018255 GO:0003735|GO:0005840|GO:0006412
Lal4g0563 247 Pfam Ribosomal protein L16p/L10e 38 192 IPR016180 GO:0003735|GO:0005840|GO:0006412
Lal4g0563 247 Gene3D Ribosomal protein L10e/L16 28 244 IPR036920 GO:0003735|GO:0005840|GO:0006412
Lal4g0563 247 TIGRFAM uL16_euk_arch: ribosomal protein uL16 29 200 IPR001197 GO:0003735|GO:0005840|GO:0006412
Lal4g0563 247 SUPERFAMILY Ribosomal protein L16p/L10e 30 199 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0563 Lal-Chr4 4085591 4088191 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0563 29 246 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 83.486 2.22e-137 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0563 K02866 - egt:105952308 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0611 21 4613831 4616559 Lal4g0563 4 4085591 4088191 LSH
Lal6g0425 6 2695607 2698237 Lal4g0563 4 4085591 4088191 PCT
Lal4g0563 4 4085591 4088191 Lal6g0425 6 2695607 2698237 PCT