Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal4g0540 ATGGATGATGTAGTATTGAGTGGTGAGAAGTTGAGATTAGTGGGAGTGGAGGAAGAGAAGATAAAGGAATTGAAGGGGTTGATGAGGTGGGAGAAGTTCTTGCCAAAAATGGTGTTAAGGGTTTTGTTGGTAGAAGCTGATGATTCTACTAGGCAGATTATAGCAGCTCTTCTAAGAAAATGCAGCTATAAAGTGGCTGCTGTTCCAGATGGCTTAAAGGCATGGGAAATACTCAAGGGAAGACCACACAATATTGATCTAATACTCACAGAAGTTGATCTGCCATCCATATCTGGCTATGCACTTCTAACACTAATTATGGAGCATGAGATTTGTAAAAACATACCCGTCATAATGATGTCATCACAAGATTCAGTCAGCACAGTATACAAATGCATGTTGAGAGGTGCTGCTGACTATCTTGTTAAGCCCCTTAGAAAAAATGAGCTGAGAAACTTGTGGCAGCATGTTTGGAGAAGACAATCGTCAACCATCGGCGTAAATGGTTCCCGAGATGAGAGTACTACACAGCAGAAGGTTGAAGCCACTGCTGAAAACAATGCTACTAGTAATCACTCGAGCGGTGATGCTGCTTTCATCCAGAGAAATAAGGAACTAATTGAGAAAGGAAGTGATGCACAGTCACTGTTCAGCTTGAAAATTCTAGCATATCTTATTCCTCGTGTAAATTTCCTTTCCAACTTCTTCGGAAGGCGCCTTGTTATGAGCTCTTGTACAAAGCCCGACTTGGAAGCTGAGAGTGGCCCTGTTGAAACCGTGAGGGAATTTTCTCCACGGACAAGTGGTGAAGCGTATCCAAATGGAACAAACACAGAAGAGGTTGAAACGTGCATTCGTTTAGGCCAGACATTTATCAAGCATGATAGTCATGCTGGAGGATTAACTGTGGGTATCTCCAAAAATGGCGAGGCAAGTACAACTAGTGGCAAGGATGGCGATCCAGAGCATTTTAGGGGTGCTAACATTTGTGGTGAGGCTCATGACAATGAGTATGTTCAAATTAGCTATTTTAAGGAAGCTATTGACTTGATTGGAGCATTTCAAACTCGTCCAAGCTGCAGTCTCAAAAACTCCACAGTTGATTGCACAGGCAAATTTGACTTTTCTCCACAATTGGATCTTTCCCTGAGAAGATCTCATCCCAGCAACTTTGAAAGTGAACTCTCCGAAGAAAGGCACACCCTCATGCATTCTAATGCTTCCGCTTTCAAGCGGTATACTAACAGGCCATTGCAAGCCACATCGGCAGTGTTGGTTAACTTCTCTGATAAACAAAGAGAACAAAGAATAAATGGTGAGAAAAATATCCCCAATGTTGCTAACTGCTGCAACTCAGATAATTCAACACCTAATATGCAGAGATGTATTATGCCTCCAGCTAGAGCCCAATCAAAAGAATCTGAATTCGCAACTTCACATTCCCAGCAAGGCCATTTTCTCCCAATTCCGGTAAAAGGTGCAAGGTTCAATGATCTATGTGCAGACTATGGTTCTATACTTCCTCCAATATTTCGTACTCAGTCAGGTCCACCATCAATGCCAAGTCCTCAGTCAGTTGTCCTCCTTGAACCAACCTTTCAGCTAAATGCATTTTATCAGTCAAATATTAGAGAAAACGATTCAAATCAGCTTTCTGAGTTTCGTGGTCCAAACGAAAACAGCACCCCGAACCACATGGCGTACACACAGGGACACAGATCAGAGCATGCAGAGGATCGGGGACATATCTCTCCTGCAAATGATCGAAGTGTATCCAGTAGTTTCTGTAATGGAAATGCAAGCAATCTTAATAGCATTGGTTATGGAAGCAACTGTGGAAATAGCAGTAACATTGATCAAGTTGCCATTGTCAGGGCAGCTTCAGAAGAGGGTAAGAATGAAAACCTCACAAACAACGAAAGTGCTTATCGATCTACCCTGAGAGAAGCAGCTCTAAACAAGTTTCGCTTGAAACGGAAAGAGAGATGCTACGAGAAGAAGGTTCGATACGAGAGCAGAAAGAAACTTGCAGAGCAGCGTCCGAGAGTGAAAGGACAATTTGTTCGTCAAACGTGCCCCGATCCTCTTTAG 2091 0.428 MDDVVLSGEKLRLVGVEEEKIKELKGLMRWEKFLPKMVLRVLLVEADDSTRQIIAALLRKCSYKVAAVPDGLKAWEILKGRPHNIDLILTEVDLPSISGYALLTLIMEHEICKNIPVIMMSSQDSVSTVYKCMLRGAADYLVKPLRKNELRNLWQHVWRRQSSTIGVNGSRDESTTQQKVEATAENNATSNHSSGDAAFIQRNKELIEKGSDAQSLFSLKILAYLIPRVNFLSNFFGRRLVMSSCTKPDLEAESGPVETVREFSPRTSGEAYPNGTNTEEVETCIRLGQTFIKHDSHAGGLTVGISKNGEASTTSGKDGDPEHFRGANICGEAHDNEYVQISYFKEAIDLIGAFQTRPSCSLKNSTVDCTGKFDFSPQLDLSLRRSHPSNFESELSEERHTLMHSNASAFKRYTNRPLQATSAVLVNFSDKQREQRINGEKNIPNVANCCNSDNSTPNMQRCIMPPARAQSKESEFATSHSQQGHFLPIPVKGARFNDLCADYGSILPPIFRTQSGPPSMPSPQSVVLLEPTFQLNAFYQSNIRENDSNQLSEFRGPNENSTPNHMAYTQGHRSEHAEDRGHISPANDRSVSSSFCNGNASNLNSIGYGSNCGNSSNIDQVAIVRAASEEGKNENLTNNESAYRSTLREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQTCPDPL 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal4g0540 696 MobiDBLite consensus disorder prediction 549 591 - -
Lal4g0540 696 ProSiteProfiles CCT domain profile. 648 690 IPR010402 GO:0005515
Lal4g0540 696 Pfam Response regulator receiver domain 41 152 IPR001789 GO:0000160
Lal4g0540 696 Gene3D - 37 223 - -
Lal4g0540 696 SMART REC_2 39 154 IPR001789 GO:0000160
Lal4g0540 696 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 213 IPR045279 GO:0009736
Lal4g0540 696 PANTHER TWO-COMPONENT RESPONSE REGULATOR 238 677 IPR045279 GO:0009736
Lal4g0540 696 Pfam CCT motif 648 690 IPR010402 GO:0005515
Lal4g0540 696 CDD psREC_PRR 41 144 - -
Lal4g0540 696 SUPERFAMILY CheY-like 39 164 IPR011006 -
Lal4g0540 696 ProSiteProfiles Response regulatory domain profile. 40 158 IPR001789 GO:0000160
Lal4g0540 696 PANTHER POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA 26 213 - -
Lal4g0540 696 PANTHER POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA 238 677 - -
Lal4g0540 696 MobiDBLite consensus disorder prediction 571 585 - -
Lal4g0540 696 MobiDBLite consensus disorder prediction 251 276 - -
Lal4g0540 696 MobiDBLite consensus disorder prediction 549 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal4g0540 Lal-Chr4 3927137 3931507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal4g0540 24 691 Response Regulator Gene Family AT5G24470 37.926 3.74e-113 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Lal4g0540 Response_reg 6.3e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal4g0540 K12130 - gmx:100777119 994.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0540 4 3927137 3931507 Lal4g0540 4 3927137 3931507 ECH
Lal17g0620 17 4425484 4429527 Lal4g0540 4 3927137 3931507 ECH
Lal17g0620 17 4425484 4429527 Lal4g0540 4 3927137 3931507 LSH
Lal21g0597 21 4497599 4501889 Lal4g0540 4 3927137 3931507 LSH